Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.15■□□□□ 0.98
CDH12P55289 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CDH12P55289 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.14■□□□□ 0.98
CDH12P55289 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CDH12P55289 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CDH12P55289 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
CDH12P55289 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
CDH12P55289 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.14■□□□□ 0.97
CDH12P55289 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDH12P55289 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.14■□□□□ 0.97
CDH12P55289 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDH12P55289 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDH12P55289 AL117328.2-201ENST00000624617 1940 ntBASIC21.14■□□□□ 0.97
CDH12P55289 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.13■□□□□ 0.97
CDH12P55289 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDH12P55289 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDH12P55289 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDH12P55289 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.13■□□□□ 0.97
CDH12P55289 NTF6A-201ENST00000591175 560 ntBASIC21.13■□□□□ 0.97
CDH12P55289 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDH12P55289 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDH12P55289 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDH12P55289 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CDH12P55289 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.12■□□□□ 0.97
CDH12P55289 DUX4L18-201ENST00000553347 1267 ntBASIC21.12■□□□□ 0.97
CDH12P55289 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.12■□□□□ 0.97
CDH12P55289 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CDH12P55289 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDH12P55289 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDH12P55289 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDH12P55289 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.11■□□□□ 0.97
CDH12P55289 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.11■□□□□ 0.97
CDH12P55289 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CDH12P55289 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDH12P55289 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CDH12P55289 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.11■□□□□ 0.97
CDH12P55289 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.11■□□□□ 0.97
CDH12P55289 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.11■□□□□ 0.97
CDH12P55289 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDH12P55289 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDH12P55289 AC233723.2-201ENST00000623798 2106 ntBASIC21.11■□□□□ 0.97
CDH12P55289 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CDH12P55289 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDH12P55289 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.11■□□□□ 0.97
CDH12P55289 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CDH12P55289 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDH12P55289 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDH12P55289 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDH12P55289 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDH12P55289 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDH12P55289 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.1■□□□□ 0.97
CDH12P55289 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
CDH12P55289 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDH12P55289 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDH12P55289 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CDH12P55289 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDH12P55289 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDH12P55289 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDH12P55289 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDH12P55289 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDH12P55289 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDH12P55289 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDH12P55289 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDH12P55289 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDH12P55289 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC21.09■□□□□ 0.97
CDH12P55289 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.09■□□□□ 0.97
CDH12P55289 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CDH12P55289 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CDH12P55289 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.09■□□□□ 0.97
CDH12P55289 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDH12P55289 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDH12P55289 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CDH12P55289 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CDH12P55289 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.08■□□□□ 0.97
CDH12P55289 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CDH12P55289 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
CDH12P55289 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CDH12P55289 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
CDH12P55289 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CDH12P55289 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.08■□□□□ 0.97
CDH12P55289 AC092068.2-201ENST00000590491 1708 ntBASIC21.08■□□□□ 0.97
CDH12P55289 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.08■□□□□ 0.96
CDH12P55289 DUSP8P3-201ENST00000399571 1760 ntBASIC21.08■□□□□ 0.96
CDH12P55289 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CDH12P55289 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH12P55289 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.07■□□□□ 0.96
CDH12P55289 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH12P55289 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.07■□□□□ 0.96
CDH12P55289 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
CDH12P55289 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDH12P55289 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDH12P55289 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH12P55289 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.07■□□□□ 0.96
CDH12P55289 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDH12P55289 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.06■□□□□ 0.96
CDH12P55289 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDH12P55289 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.06■□□□□ 0.96
CDH12P55289 AC139795.1-202ENST00000500444 432 ntBASIC21.06■□□□□ 0.96
CDH12P55289 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDH12P55289 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms