Protein–RNA interactions for Protein: P49642

PRIM1, DNA primase small subunit, humanhuman

Known RBP Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRIM1P49642 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
PRIM1P49642 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
PRIM1P49642 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC29.87■■■□□ 2.37
PRIM1P49642 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC29.87■■■□□ 2.37
PRIM1P49642 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
PRIM1P49642 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
PRIM1P49642 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
PRIM1P49642 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC29.86■■■□□ 2.37
PRIM1P49642 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC29.86■■■□□ 2.37
PRIM1P49642 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC29.86■■■□□ 2.37
PRIM1P49642 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
PRIM1P49642 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
PRIM1P49642 AL031602.1-201ENST00000633169 911 ntBASIC29.86■■■□□ 2.37
PRIM1P49642 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
PRIM1P49642 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
PRIM1P49642 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC29.85■■■□□ 2.37
PRIM1P49642 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC29.85■■■□□ 2.37
PRIM1P49642 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC29.85■■■□□ 2.37
PRIM1P49642 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC29.85■■■□□ 2.37
PRIM1P49642 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC29.85■■■□□ 2.37
PRIM1P49642 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC29.85■■■□□ 2.37
PRIM1P49642 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
PRIM1P49642 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC29.84■■■□□ 2.37
PRIM1P49642 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC29.84■■■□□ 2.37
PRIM1P49642 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC29.84■■■□□ 2.37
PRIM1P49642 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
PRIM1P49642 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC29.84■■■□□ 2.37
PRIM1P49642 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC29.83■■■□□ 2.37
PRIM1P49642 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC29.83■■■□□ 2.37
PRIM1P49642 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
PRIM1P49642 KRT18P5-201ENST00000436075 1291 ntBASIC29.83■■■□□ 2.37
PRIM1P49642 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC29.83■■■□□ 2.37
PRIM1P49642 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
PRIM1P49642 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC29.82■■■□□ 2.36
PRIM1P49642 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
PRIM1P49642 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
PRIM1P49642 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC29.82■■■□□ 2.36
PRIM1P49642 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC29.82■■■□□ 2.36
PRIM1P49642 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC29.81■■■□□ 2.36
PRIM1P49642 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
PRIM1P49642 CREM-210ENST00000374721 2020 ntTSL 5 BASIC29.81■■■□□ 2.36
PRIM1P49642 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
PRIM1P49642 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC29.81■■■□□ 2.36
PRIM1P49642 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC29.81■■■□□ 2.36
PRIM1P49642 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC29.81■■■□□ 2.36
PRIM1P49642 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
PRIM1P49642 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC29.81■■■□□ 2.36
PRIM1P49642 AL137784.2-201ENST00000607332 1000 ntBASIC29.81■■■□□ 2.36
PRIM1P49642 AC009086.3-201ENST00000623486 1008 ntBASIC29.81■■■□□ 2.36
PRIM1P49642 AC092437.1-201ENST00000624794 1048 ntBASIC29.81■■■□□ 2.36
PRIM1P49642 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
PRIM1P49642 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
PRIM1P49642 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
PRIM1P49642 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC29.8■■■□□ 2.36
PRIM1P49642 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC29.8■■■□□ 2.36
PRIM1P49642 SNX3-202ENST00000349379 890 ntTSL 2 BASIC29.8■■■□□ 2.36
PRIM1P49642 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC29.8■■■□□ 2.36
PRIM1P49642 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
PRIM1P49642 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC29.79■■■□□ 2.36
PRIM1P49642 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC29.79■■■□□ 2.36
PRIM1P49642 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
PRIM1P49642 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC29.79■■■□□ 2.36
PRIM1P49642 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
PRIM1P49642 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
PRIM1P49642 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC29.79■■■□□ 2.36
PRIM1P49642 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC29.79■■■□□ 2.36
PRIM1P49642 AL022069.1-201ENST00000568025 1636 ntBASIC29.78■■■□□ 2.36
PRIM1P49642 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC29.78■■■□□ 2.36
PRIM1P49642 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC29.78■■■□□ 2.36
PRIM1P49642 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC29.78■■■□□ 2.36
PRIM1P49642 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC29.78■■■□□ 2.36
PRIM1P49642 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC29.78■■■□□ 2.36
PRIM1P49642 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
PRIM1P49642 SLC6A10P-202ENST00000431994 2058 ntBASIC29.78■■■□□ 2.36
PRIM1P49642 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
PRIM1P49642 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC29.77■■■□□ 2.36
PRIM1P49642 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC29.77■■■□□ 2.36
PRIM1P49642 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC29.77■■■□□ 2.36
PRIM1P49642 YBX1P1-201ENST00000445822 960 ntBASIC29.77■■■□□ 2.36
PRIM1P49642 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
PRIM1P49642 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC29.77■■■□□ 2.36
PRIM1P49642 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC29.77■■■□□ 2.36
PRIM1P49642 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC29.76■■■□□ 2.36
PRIM1P49642 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC29.76■■■□□ 2.36
PRIM1P49642 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
PRIM1P49642 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
PRIM1P49642 DUX4L2-201ENST00000561772 1275 ntBASIC29.76■■■□□ 2.35
PRIM1P49642 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC29.76■■■□□ 2.35
PRIM1P49642 DUX4L6-201ENST00000626483 1275 ntBASIC29.76■■■□□ 2.35
PRIM1P49642 DUX4L1-201ENST00000627662 1275 ntBASIC29.76■■■□□ 2.35
PRIM1P49642 DUX4L8-201ENST00000629013 1275 ntBASIC29.76■■■□□ 2.35
PRIM1P49642 DUX4L3-201ENST00000630187 1275 ntBASIC29.76■■■□□ 2.35
PRIM1P49642 DUX4L7-201ENST00000630678 1275 ntBASIC29.76■■■□□ 2.35
PRIM1P49642 DUX4L5-201ENST00000630834 1275 ntBASIC29.76■■■□□ 2.35
PRIM1P49642 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC29.76■■■□□ 2.35
PRIM1P49642 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC29.76■■■□□ 2.35
PRIM1P49642 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC29.75■■■□□ 2.35
PRIM1P49642 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC29.75■■■□□ 2.35
PRIM1P49642 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC29.75■■■□□ 2.35
PRIM1P49642 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC29.75■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms