Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
HNF4AP41235 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
HNF4AP41235 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
HNF4AP41235 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC22.03■■□□□ 1.12
HNF4AP41235 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
HNF4AP41235 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
HNF4AP41235 ALDH1A3-203ENST00000557963 1670 ntBASIC22.02■■□□□ 1.12
HNF4AP41235 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC22.02■■□□□ 1.12
HNF4AP41235 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HNF4AP41235 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
HNF4AP41235 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC22.02■■□□□ 1.12
HNF4AP41235 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC22.02■■□□□ 1.12
HNF4AP41235 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
HNF4AP41235 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC22.01■■□□□ 1.11
HNF4AP41235 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
HNF4AP41235 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
HNF4AP41235 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
HNF4AP41235 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
HNF4AP41235 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
HNF4AP41235 BX664725.1-201ENST00000438252 379 ntBASIC22.01■■□□□ 1.11
HNF4AP41235 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC22.01■■□□□ 1.11
HNF4AP41235 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
HNF4AP41235 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
HNF4AP41235 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC22.01■■□□□ 1.11
HNF4AP41235 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
HNF4AP41235 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
HNF4AP41235 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
HNF4AP41235 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
HNF4AP41235 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
HNF4AP41235 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC22■■□□□ 1.11
HNF4AP41235 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HNF4AP41235 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC22■■□□□ 1.11
HNF4AP41235 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HNF4AP41235 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HNF4AP41235 AC137630.3-201ENST00000607245 391 ntBASIC22■■□□□ 1.11
HNF4AP41235 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC22■■□□□ 1.11
HNF4AP41235 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
HNF4AP41235 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HNF4AP41235 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HNF4AP41235 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
HNF4AP41235 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HNF4AP41235 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
HNF4AP41235 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HNF4AP41235 AC239859.2-201ENST00000444165 318 ntBASIC21.99■■□□□ 1.11
HNF4AP41235 AC004448.1-201ENST00000458332 883 ntBASIC21.99■■□□□ 1.11
HNF4AP41235 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HNF4AP41235 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.99■■□□□ 1.11
HNF4AP41235 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
HNF4AP41235 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HNF4AP41235 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HNF4AP41235 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
HNF4AP41235 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.98■■□□□ 1.11
HNF4AP41235 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HNF4AP41235 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
HNF4AP41235 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.98■■□□□ 1.11
HNF4AP41235 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.98■■□□□ 1.11
HNF4AP41235 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.98■■□□□ 1.11
HNF4AP41235 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HNF4AP41235 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.98■■□□□ 1.11
HNF4AP41235 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.98■■□□□ 1.11
HNF4AP41235 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
HNF4AP41235 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HNF4AP41235 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
HNF4AP41235 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HNF4AP41235 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HNF4AP41235 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.97■■□□□ 1.11
HNF4AP41235 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.97■■□□□ 1.11
HNF4AP41235 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HNF4AP41235 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.97■■□□□ 1.11
HNF4AP41235 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.97■■□□□ 1.11
HNF4AP41235 AL035685.1-201ENST00000636663 812 ntBASIC21.97■■□□□ 1.11
HNF4AP41235 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
HNF4AP41235 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.97■■□□□ 1.11
HNF4AP41235 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
HNF4AP41235 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HNF4AP41235 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HNF4AP41235 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
HNF4AP41235 KRT125P-201ENST00000546827 989 ntBASIC21.96■■□□□ 1.11
HNF4AP41235 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HNF4AP41235 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.96■■□□□ 1.11
HNF4AP41235 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
HNF4AP41235 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
HNF4AP41235 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
HNF4AP41235 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HNF4AP41235 DUSP8P5-201ENST00000422884 1815 ntBASIC21.95■■□□□ 1.1
HNF4AP41235 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HNF4AP41235 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.95■■□□□ 1.1
HNF4AP41235 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HNF4AP41235 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
HNF4AP41235 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HNF4AP41235 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HNF4AP41235 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HNF4AP41235 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
HNF4AP41235 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HNF4AP41235 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HNF4AP41235 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.94■■□□□ 1.1
HNF4AP41235 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.94■■□□□ 1.1
HNF4AP41235 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
HNF4AP41235 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HNF4AP41235 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms