Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC26.27■■□□□ 1.8
MMP1P03956 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC26.27■■□□□ 1.8
MMP1P03956 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC26.27■■□□□ 1.8
MMP1P03956 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
MMP1P03956 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
MMP1P03956 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
MMP1P03956 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.79
MMP1P03956 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
MMP1P03956 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
MMP1P03956 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
MMP1P03956 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
MMP1P03956 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC26.26■■□□□ 1.79
MMP1P03956 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
MMP1P03956 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC26.26■■□□□ 1.79
MMP1P03956 RNF146-205ENST00000477776 762 ntTSL 3 BASIC26.26■■□□□ 1.79
MMP1P03956 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC26.26■■□□□ 1.79
MMP1P03956 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC26.26■■□□□ 1.79
MMP1P03956 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC26.26■■□□□ 1.79
MMP1P03956 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
MMP1P03956 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
MMP1P03956 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
MMP1P03956 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC26.25■■□□□ 1.79
MMP1P03956 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
MMP1P03956 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
MMP1P03956 BX664725.1-201ENST00000438252 379 ntBASIC26.25■■□□□ 1.79
MMP1P03956 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
MMP1P03956 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
MMP1P03956 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC26.25■■□□□ 1.79
MMP1P03956 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC26.25■■□□□ 1.79
MMP1P03956 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC26.24■■□□□ 1.79
MMP1P03956 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC26.24■■□□□ 1.79
MMP1P03956 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
MMP1P03956 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
MMP1P03956 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC26.24■■□□□ 1.79
MMP1P03956 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC26.24■■□□□ 1.79
MMP1P03956 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
MMP1P03956 LSM7-203ENST00000585409 512 ntTSL 2 BASIC26.24■■□□□ 1.79
MMP1P03956 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
MMP1P03956 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
MMP1P03956 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
MMP1P03956 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
MMP1P03956 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
MMP1P03956 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC26.23■■□□□ 1.79
MMP1P03956 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC26.23■■□□□ 1.79
MMP1P03956 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC26.23■■□□□ 1.79
MMP1P03956 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
MMP1P03956 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
MMP1P03956 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
MMP1P03956 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
MMP1P03956 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
MMP1P03956 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.23■■□□□ 1.79
MMP1P03956 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
MMP1P03956 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
MMP1P03956 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
MMP1P03956 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
MMP1P03956 RARA-203ENST00000394086 2008 ntTSL 2 BASIC26.22■■□□□ 1.79
MMP1P03956 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
MMP1P03956 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
MMP1P03956 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC26.21■■□□□ 1.79
MMP1P03956 CASK-201ENST00000378154 2494 ntTSL 5 BASIC26.21■■□□□ 1.79
MMP1P03956 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC26.21■■□□□ 1.79
MMP1P03956 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC26.2■■□□□ 1.79
MMP1P03956 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.79
MMP1P03956 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC26.2■■□□□ 1.79
MMP1P03956 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC26.2■■□□□ 1.79
MMP1P03956 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
MMP1P03956 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
MMP1P03956 Z92544.1-202ENST00000571933 1220 ntBASIC26.2■■□□□ 1.78
MMP1P03956 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC26.2■■□□□ 1.78
MMP1P03956 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
MMP1P03956 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
MMP1P03956 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC26.19■■□□□ 1.78
MMP1P03956 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
MMP1P03956 AC239859.2-201ENST00000444165 318 ntBASIC26.19■■□□□ 1.78
MMP1P03956 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
MMP1P03956 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
MMP1P03956 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
MMP1P03956 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
MMP1P03956 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
MMP1P03956 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
MMP1P03956 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC26.18■■□□□ 1.78
MMP1P03956 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC26.18■■□□□ 1.78
MMP1P03956 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC26.18■■□□□ 1.78
MMP1P03956 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC26.17■■□□□ 1.78
MMP1P03956 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
MMP1P03956 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC26.17■■□□□ 1.78
MMP1P03956 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
MMP1P03956 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC26.17■■□□□ 1.78
MMP1P03956 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC26.17■■□□□ 1.78
MMP1P03956 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
MMP1P03956 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC26.17■■□□□ 1.78
MMP1P03956 CLTA-210ENST00000540080 989 ntTSL 2 BASIC26.17■■□□□ 1.78
MMP1P03956 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
MMP1P03956 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
MMP1P03956 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
MMP1P03956 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC26.16■■□□□ 1.78
MMP1P03956 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC26.16■■□□□ 1.78
MMP1P03956 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
MMP1P03956 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
MMP1P03956 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC26.16■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms