Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC26.27■■□□□ 1.8
MMP1P03956 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC26.27■■□□□ 1.8
MMP1P03956 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC26.27■■□□□ 1.8
MMP1P03956 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
MMP1P03956 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
MMP1P03956 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
MMP1P03956 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.79
MMP1P03956 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
MMP1P03956 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
MMP1P03956 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
MMP1P03956 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
MMP1P03956 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC26.26■■□□□ 1.79
MMP1P03956 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
MMP1P03956 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC26.26■■□□□ 1.79
MMP1P03956 RNF146-205ENST00000477776 762 ntTSL 3 BASIC26.26■■□□□ 1.79
MMP1P03956 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC26.26■■□□□ 1.79
MMP1P03956 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC26.26■■□□□ 1.79
MMP1P03956 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC26.26■■□□□ 1.79
MMP1P03956 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
MMP1P03956 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
MMP1P03956 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
MMP1P03956 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC26.25■■□□□ 1.79
MMP1P03956 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
MMP1P03956 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
MMP1P03956 BX664725.1-201ENST00000438252 379 ntBASIC26.25■■□□□ 1.79
MMP1P03956 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
MMP1P03956 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
MMP1P03956 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC26.25■■□□□ 1.79
MMP1P03956 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC26.25■■□□□ 1.79
MMP1P03956 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC26.24■■□□□ 1.79
MMP1P03956 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC26.24■■□□□ 1.79
MMP1P03956 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
MMP1P03956 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
MMP1P03956 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC26.24■■□□□ 1.79
MMP1P03956 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC26.24■■□□□ 1.79
MMP1P03956 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
MMP1P03956 LSM7-203ENST00000585409 512 ntTSL 2 BASIC26.24■■□□□ 1.79
MMP1P03956 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
MMP1P03956 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
MMP1P03956 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
MMP1P03956 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
MMP1P03956 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
MMP1P03956 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC26.23■■□□□ 1.79
MMP1P03956 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC26.23■■□□□ 1.79
MMP1P03956 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC26.23■■□□□ 1.79
MMP1P03956 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
MMP1P03956 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
MMP1P03956 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
MMP1P03956 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
MMP1P03956 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
MMP1P03956 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.23■■□□□ 1.79
MMP1P03956 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
MMP1P03956 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
MMP1P03956 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
MMP1P03956 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
MMP1P03956 RARA-203ENST00000394086 2008 ntTSL 2 BASIC26.22■■□□□ 1.79
MMP1P03956 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
MMP1P03956 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
MMP1P03956 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC26.21■■□□□ 1.79
MMP1P03956 CASK-201ENST00000378154 2494 ntTSL 5 BASIC26.21■■□□□ 1.79
MMP1P03956 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC26.21■■□□□ 1.79
MMP1P03956 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC26.2■■□□□ 1.79
MMP1P03956 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.79
MMP1P03956 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC26.2■■□□□ 1.79
MMP1P03956 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC26.2■■□□□ 1.79
MMP1P03956 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
MMP1P03956 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
MMP1P03956 Z92544.1-202ENST00000571933 1220 ntBASIC26.2■■□□□ 1.78
MMP1P03956 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC26.2■■□□□ 1.78
MMP1P03956 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
MMP1P03956 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
MMP1P03956 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC26.19■■□□□ 1.78
MMP1P03956 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
MMP1P03956 AC239859.2-201ENST00000444165 318 ntBASIC26.19■■□□□ 1.78
MMP1P03956 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
MMP1P03956 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
MMP1P03956 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
MMP1P03956 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
MMP1P03956 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
MMP1P03956 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
MMP1P03956 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC26.18■■□□□ 1.78
MMP1P03956 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC26.18■■□□□ 1.78
MMP1P03956 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC26.18■■□□□ 1.78
MMP1P03956 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC26.17■■□□□ 1.78
MMP1P03956 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
MMP1P03956 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC26.17■■□□□ 1.78
MMP1P03956 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
MMP1P03956 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC26.17■■□□□ 1.78
MMP1P03956 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC26.17■■□□□ 1.78
MMP1P03956 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
MMP1P03956 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC26.17■■□□□ 1.78
MMP1P03956 CLTA-210ENST00000540080 989 ntTSL 2 BASIC26.17■■□□□ 1.78
MMP1P03956 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
MMP1P03956 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
MMP1P03956 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
MMP1P03956 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC26.16■■□□□ 1.78
MMP1P03956 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC26.16■■□□□ 1.78
MMP1P03956 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
MMP1P03956 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
MMP1P03956 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC26.16■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms