Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
VPS4BO75351 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC22.26■■□□□ 1.15
VPS4BO75351 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
VPS4BO75351 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
VPS4BO75351 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
VPS4BO75351 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
VPS4BO75351 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
VPS4BO75351 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VPS4BO75351 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
VPS4BO75351 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC22.25■■□□□ 1.15
VPS4BO75351 Z92544.1-202ENST00000571933 1220 ntBASIC22.25■■□□□ 1.15
VPS4BO75351 GRAMD4P7-201ENST00000578182 1232 ntBASIC22.25■■□□□ 1.15
VPS4BO75351 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
VPS4BO75351 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
VPS4BO75351 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VPS4BO75351 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC22.25■■□□□ 1.15
VPS4BO75351 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.24■■□□□ 1.15
VPS4BO75351 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
VPS4BO75351 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
VPS4BO75351 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC22.24■■□□□ 1.15
VPS4BO75351 TK2-216ENST00000564917 1156 ntTSL 3 BASIC22.24■■□□□ 1.15
VPS4BO75351 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
VPS4BO75351 ME2-208ENST00000638937 2471 ntTSL 5 BASIC22.24■■□□□ 1.15
VPS4BO75351 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
VPS4BO75351 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC22.24■■□□□ 1.15
VPS4BO75351 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
VPS4BO75351 AC090877.2-201ENST00000558441 1738 ntBASIC22.23■■□□□ 1.15
VPS4BO75351 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
VPS4BO75351 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC22.23■■□□□ 1.15
VPS4BO75351 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC22.23■■□□□ 1.15
VPS4BO75351 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC22.23■■□□□ 1.15
VPS4BO75351 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC22.23■■□□□ 1.15
VPS4BO75351 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
VPS4BO75351 AC079834.2-201ENST00000609776 1949 ntBASIC22.23■■□□□ 1.15
VPS4BO75351 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
VPS4BO75351 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
VPS4BO75351 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
VPS4BO75351 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
VPS4BO75351 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.22■■□□□ 1.15
VPS4BO75351 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
VPS4BO75351 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
VPS4BO75351 RPS2P7-201ENST00000447334 885 ntBASIC22.22■■□□□ 1.15
VPS4BO75351 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC22.22■■□□□ 1.15
VPS4BO75351 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
VPS4BO75351 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
VPS4BO75351 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
VPS4BO75351 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
VPS4BO75351 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
VPS4BO75351 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
VPS4BO75351 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC22.21■■□□□ 1.15
VPS4BO75351 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.21■■□□□ 1.15
VPS4BO75351 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
VPS4BO75351 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
VPS4BO75351 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
VPS4BO75351 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC22.2■■□□□ 1.15
VPS4BO75351 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.15
VPS4BO75351 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC22.2■■□□□ 1.15
VPS4BO75351 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
VPS4BO75351 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
VPS4BO75351 PEMT-206ENST00000435340 960 ntTSL 5 BASIC22.2■■□□□ 1.14
VPS4BO75351 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC22.2■■□□□ 1.14
VPS4BO75351 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC22.2■■□□□ 1.14
VPS4BO75351 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
VPS4BO75351 AC019171.1-201ENST00000601251 1056 ntBASIC22.2■■□□□ 1.14
VPS4BO75351 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.2■■□□□ 1.14
VPS4BO75351 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC22.2■■□□□ 1.14
VPS4BO75351 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
VPS4BO75351 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
VPS4BO75351 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC22.2■■□□□ 1.14
VPS4BO75351 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
VPS4BO75351 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC22.2■■□□□ 1.14
VPS4BO75351 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC22.19■■□□□ 1.14
VPS4BO75351 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
VPS4BO75351 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
VPS4BO75351 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
VPS4BO75351 KRT125P-201ENST00000546827 989 ntBASIC22.19■■□□□ 1.14
VPS4BO75351 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC22.19■■□□□ 1.14
VPS4BO75351 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
VPS4BO75351 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC22.19■■□□□ 1.14
VPS4BO75351 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
VPS4BO75351 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC22.19■■□□□ 1.14
VPS4BO75351 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
VPS4BO75351 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
VPS4BO75351 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC22.18■■□□□ 1.14
VPS4BO75351 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC22.18■■□□□ 1.14
VPS4BO75351 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
VPS4BO75351 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC22.18■■□□□ 1.14
VPS4BO75351 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
VPS4BO75351 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC22.18■■□□□ 1.14
VPS4BO75351 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC22.18■■□□□ 1.14
VPS4BO75351 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
VPS4BO75351 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
VPS4BO75351 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
VPS4BO75351 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
VPS4BO75351 CD37-213ENST00000598095 1598 ntTSL 2 BASIC22.17■■□□□ 1.14
VPS4BO75351 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
VPS4BO75351 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
VPS4BO75351 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
VPS4BO75351 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
VPS4BO75351 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms