Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 RER1-203ENST00000378513 3000 ntTSL 3 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 AC055811.3-201ENST00000584952 686 ntBASIC27.56■■■□□ 2
SHROOM4Q9ULL8 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 MME-218ENST00000625667 363 ntTSL 5 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 MVK-217ENST00000639206 367 ntTSL 5 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 AL672207.1-201ENST00000328462 1570 ntBASIC27.56■■■□□ 2
SHROOM4Q9ULL8 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC27.56■■■□□ 2
SHROOM4Q9ULL8 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
SHROOM4Q9ULL8 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
SHROOM4Q9ULL8 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
SHROOM4Q9ULL8 MX1-218ENST00000619682 1980 ntTSL 5 BASIC27.55■■■□□ 2
SHROOM4Q9ULL8 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
SHROOM4Q9ULL8 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC27.55■■■□□ 2
SHROOM4Q9ULL8 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC27.55■■■□□ 2
SHROOM4Q9ULL8 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
SHROOM4Q9ULL8 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC27.55■■■□□ 2
SHROOM4Q9ULL8 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC27.55■■■□□ 2
SHROOM4Q9ULL8 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC27.55■■■□□ 2
SHROOM4Q9ULL8 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC27.55■■■□□ 2
SHROOM4Q9ULL8 KRT17P4-201ENST00000429445 819 ntBASIC27.55■■■□□ 2
SHROOM4Q9ULL8 AC007952.4-201ENST00000573866 637 ntBASIC27.55■■■□□ 2
SHROOM4Q9ULL8 MIR2392-201ENST00000584881 84 ntBASIC27.55■■■□□ 2
SHROOM4Q9ULL8 RPS5-204ENST00000598098 536 ntTSL 2 BASIC27.55■■■□□ 2
SHROOM4Q9ULL8 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC27.55■■■□□ 2
SHROOM4Q9ULL8 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC27.55■■■□□ 2
SHROOM4Q9ULL8 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC27.55■■■□□ 2
SHROOM4Q9ULL8 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
SHROOM4Q9ULL8 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 MIR3180-2-201ENST00000581748 88 ntBASIC27.54■■■□□ 2
SHROOM4Q9ULL8 AC140113.1-201ENST00000603467 169 ntBASIC27.54■■■□□ 2
SHROOM4Q9ULL8 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC27.54■■■□□ 2
SHROOM4Q9ULL8 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC27.53■■■□□ 2
SHROOM4Q9ULL8 AHCYP4-201ENST00000419201 1315 ntBASIC27.53■■■□□ 2
SHROOM4Q9ULL8 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
SHROOM4Q9ULL8 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC27.53■■■□□ 2
SHROOM4Q9ULL8 AC106047.2-201ENST00000511723 743 ntBASIC27.53■■■□□ 2
SHROOM4Q9ULL8 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC27.53■■■□□ 2
SHROOM4Q9ULL8 AC002044.2-201ENST00000624910 970 ntBASIC27.53■■■□□ 2
SHROOM4Q9ULL8 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC27.53■■■□□ 2
SHROOM4Q9ULL8 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
SHROOM4Q9ULL8 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
SHROOM4Q9ULL8 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC27.53■■■□□ 2
SHROOM4Q9ULL8 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC27.53■■■□□ 2
SHROOM4Q9ULL8 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC27.53■■■□□ 2
SHROOM4Q9ULL8 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 F11R-206ENST00000621309 4770 ntTSL 5 BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 AC011471.3-201ENST00000623576 402 ntBASIC27.52■■■□□ 2
SHROOM4Q9ULL8 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC27.52■■■□□ 2
SHROOM4Q9ULL8 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC27.52■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms