Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 MTX1P1-201ENST00000440904 838 ntBASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 AC100827.2-201ENST00000563214 1194 ntBASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 KLK11-210ENST00000600362 759 ntTSL 3 BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
BLOC1S4Q9NUP1 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
BLOC1S4Q9NUP1 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
BLOC1S4Q9NUP1 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
BLOC1S4Q9NUP1 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
BLOC1S4Q9NUP1 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
BLOC1S4Q9NUP1 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC16.27■□□□□ 0.19
BLOC1S4Q9NUP1 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC16.27■□□□□ 0.19
BLOC1S4Q9NUP1 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.27■□□□□ 0.19
BLOC1S4Q9NUP1 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 RDX-218ENST00000544551 4117 ntTSL 2 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 CYP4F23P-201ENST00000593402 1579 ntBASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 MIR663B-201ENST00000408361 115 ntBASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 ST13P19-201ENST00000442505 1124 ntBASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 Z93015.1-201ENST00000451718 390 ntBASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 AL160314.3-201ENST00000556041 767 ntBASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 AC005962.1-201ENST00000584100 773 ntBASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 PCDHA3-202ENST00000532566 4594 ntBASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 AL022313.4-201ENST00000562756 2046 ntBASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
BLOC1S4Q9NUP1 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
BLOC1S4Q9NUP1 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
BLOC1S4Q9NUP1 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
BLOC1S4Q9NUP1 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
BLOC1S4Q9NUP1 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
BLOC1S4Q9NUP1 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
BLOC1S4Q9NUP1 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
BLOC1S4Q9NUP1 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC16.25■□□□□ 0.19
BLOC1S4Q9NUP1 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
BLOC1S4Q9NUP1 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms