Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 AC152010.1-201ENST00000415779 2006 ntBASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 TKT-201ENST00000296289 1931 ntTSL 5 BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 AC090505.1-201ENST00000430515 1834 ntBASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 RNF41-210ENST00000552244 716 ntTSL 3 BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 DUX4L45-201ENST00000566406 1057 ntBASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 AC008825.2-201ENST00000603374 718 ntBASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 AC027601.3-201ENST00000622907 509 ntBASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC4Q9NTJ3 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 HSPA7-201ENST00000445535 1927 ntBASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 NOP2-220ENST00000545915 630 ntTSL 2 BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
SMC4Q9NTJ3 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SMC4Q9NTJ3 WARS-203ENST00000358655 2466 ntTSL 2 BASIC18.85■□□□□ 0.61
SMC4Q9NTJ3 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC4Q9NTJ3 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SMC4Q9NTJ3 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SMC4Q9NTJ3 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC4Q9NTJ3 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC4Q9NTJ3 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC4Q9NTJ3 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC18.85■□□□□ 0.61
SMC4Q9NTJ3 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC4Q9NTJ3 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms