Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AL049840.4-201ENST00000602422 811 ntBASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 MIR3687-1-201ENST00000614492 61 ntBASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 FAM90A12P-201ENST00000519497 2375 ntBASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 FAM90A24P-201ENST00000520792 2369 ntBASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 HOXA7-201ENST00000242159 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 KRT18P13-201ENST00000400056 1290 ntBASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 AC069120.2-201ENST00000524091 540 ntBASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 AC036164.1-201ENST00000570544 333 ntBASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 AL662799.1-202ENST00000614205 422 ntBASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 AC111170.3-201ENST00000624282 2464 ntBASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 BTBD7P1-201ENST00000447253 1453 ntBASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC28BQ9BUN5 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 SLC9A3P3-201ENST00000457608 2229 ntBASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 AC254562.1-201ENST00000417586 456 ntBASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 CNN2P2-201ENST00000443536 909 ntBASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 CNN2P3-201ENST00000450201 906 ntBASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 AC112482.1-201ENST00000492080 688 ntBASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 HLA-J-203ENST00000494367 1087 ntBASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 AL136317.3-201ENST00000618497 906 ntBASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms