Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC14.11□□□□□ -0.15
VPS13AQ96RL7 AC025186.1-201ENST00000478174 870 ntBASIC14.11□□□□□ -0.15
VPS13AQ96RL7 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.11□□□□□ -0.15
VPS13AQ96RL7 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 LINC00265-2P-201ENST00000413372 782 ntBASIC14.1□□□□□ -0.15
VPS13AQ96RL7 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 PSAT1P2-201ENST00000426107 972 ntBASIC14.1□□□□□ -0.15
VPS13AQ96RL7 B9D1-206ENST00000461069 923 ntTSL 2 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 RN7SL375P-201ENST00000492442 298 ntBASIC14.1□□□□□ -0.15
VPS13AQ96RL7 AC008494.1-201ENST00000497612 796 ntBASIC14.1□□□□□ -0.15
VPS13AQ96RL7 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 AC011431.1-201ENST00000512971 230 ntBASIC14.1□□□□□ -0.15
VPS13AQ96RL7 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 AC120498.7-201ENST00000562876 330 ntBASIC14.1□□□□□ -0.15
VPS13AQ96RL7 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
VPS13AQ96RL7 AC091769.1-201ENST00000619576 568 ntBASIC14.1□□□□□ -0.15
VPS13AQ96RL7 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 AL365181.3-201ENST00000605886 3222 ntBASIC14.09□□□□□ -0.15
VPS13AQ96RL7 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 SARS-202ENST00000369923 1882 ntTSL 5 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 GLIPR1L2-203ENST00000547164 509 ntTSL 5 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 AC112220.4-201ENST00000604982 1263 ntBASIC14.09□□□□□ -0.15
VPS13AQ96RL7 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 AC090386.2-201ENST00000623010 1039 ntBASIC14.09□□□□□ -0.15
VPS13AQ96RL7 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms