Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 BASP1P1-201ENST00000430708 665 ntBASIC16.77■□□□□ 0.28
ERCC4Q92889 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC4Q92889 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC4Q92889 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.77■□□□□ 0.28
ERCC4Q92889 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.77■□□□□ 0.28
ERCC4Q92889 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.77■□□□□ 0.28
ERCC4Q92889 CHCHD2P3-201ENST00000603038 451 ntBASIC16.77■□□□□ 0.28
ERCC4Q92889 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC4Q92889 AC003102.2-201ENST00000589195 1469 ntBASIC16.77■□□□□ 0.28
ERCC4Q92889 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ERCC4Q92889 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ERCC4Q92889 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC16.77■□□□□ 0.27
ERCC4Q92889 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC16.77■□□□□ 0.27
ERCC4Q92889 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
ERCC4Q92889 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
ERCC4Q92889 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ERCC4Q92889 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ERCC4Q92889 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ERCC4Q92889 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ERCC4Q92889 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
ERCC4Q92889 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC4Q92889 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
ERCC4Q92889 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.76■□□□□ 0.27
ERCC4Q92889 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC16.76■□□□□ 0.27
ERCC4Q92889 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC16.76■□□□□ 0.27
ERCC4Q92889 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
ERCC4Q92889 INE2-201ENST00000630399 1874 ntBASIC16.76■□□□□ 0.27
ERCC4Q92889 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC4Q92889 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC4Q92889 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC4Q92889 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
ERCC4Q92889 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC16.76■□□□□ 0.27
ERCC4Q92889 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC16.76■□□□□ 0.27
ERCC4Q92889 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC4Q92889 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
ERCC4Q92889 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
ERCC4Q92889 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC4Q92889 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.76■□□□□ 0.27
ERCC4Q92889 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
ERCC4Q92889 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.76■□□□□ 0.27
ERCC4Q92889 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.76■□□□□ 0.27
ERCC4Q92889 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.76■□□□□ 0.27
ERCC4Q92889 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
ERCC4Q92889 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC4Q92889 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC16.76■□□□□ 0.27
ERCC4Q92889 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC16.76■□□□□ 0.27
ERCC4Q92889 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.76■□□□□ 0.27
ERCC4Q92889 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.76■□□□□ 0.27
ERCC4Q92889 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.76■□□□□ 0.27
ERCC4Q92889 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.76■□□□□ 0.27
ERCC4Q92889 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.76■□□□□ 0.27
ERCC4Q92889 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.76■□□□□ 0.27
ERCC4Q92889 AC005252.2-201ENST00000624630 1141 ntBASIC16.76■□□□□ 0.27
ERCC4Q92889 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.76■□□□□ 0.27
ERCC4Q92889 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC4Q92889 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC4Q92889 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC16.76■□□□□ 0.27
ERCC4Q92889 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
ERCC4Q92889 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC4Q92889 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC16.76■□□□□ 0.27
ERCC4Q92889 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC16.76■□□□□ 0.27
ERCC4Q92889 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC16.76■□□□□ 0.27
ERCC4Q92889 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC4Q92889 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC4Q92889 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC4Q92889 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC4Q92889 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC4Q92889 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.75■□□□□ 0.27
ERCC4Q92889 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC4Q92889 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC4Q92889 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC4Q92889 FUK-202ENST00000378912 3925 ntTSL 2 BASIC16.75■□□□□ 0.27
ERCC4Q92889 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
ERCC4Q92889 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC4Q92889 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC4Q92889 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC16.75■□□□□ 0.27
ERCC4Q92889 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
ERCC4Q92889 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
ERCC4Q92889 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
ERCC4Q92889 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC4Q92889 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC4Q92889 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC4Q92889 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC16.75■□□□□ 0.27
ERCC4Q92889 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.75■□□□□ 0.27
ERCC4Q92889 RPL13AP25-201ENST00000484130 612 ntBASIC16.75■□□□□ 0.27
ERCC4Q92889 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.75■□□□□ 0.27
ERCC4Q92889 AC022616.1-201ENST00000518688 554 ntBASIC16.75■□□□□ 0.27
ERCC4Q92889 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
ERCC4Q92889 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC4Q92889 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC16.75■□□□□ 0.27
ERCC4Q92889 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC4Q92889 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC4Q92889 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC4Q92889 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC16.75■□□□□ 0.27
ERCC4Q92889 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC4Q92889 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
ERCC4Q92889 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC4Q92889 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
ERCC4Q92889 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
ERCC4Q92889 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms