Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 AGGF1P1-201ENST00000509500 2073 ntBASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC88AQ3V6T2 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC88AQ3V6T2 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC17.58■□□□□ 0.41
CCDC88AQ3V6T2 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC88AQ3V6T2 AC018638.5-201ENST00000450885 754 ntBASIC17.58■□□□□ 0.41
CCDC88AQ3V6T2 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC17.58■□□□□ 0.41
CCDC88AQ3V6T2 AL160191.2-201ENST00000603975 601 ntBASIC17.58■□□□□ 0.41
CCDC88AQ3V6T2 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC17.58■□□□□ 0.41
CCDC88AQ3V6T2 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.58■□□□□ 0.41
CCDC88AQ3V6T2 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC88AQ3V6T2 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC88AQ3V6T2 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC17.58■□□□□ 0.41
CCDC88AQ3V6T2 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.58■□□□□ 0.41
CCDC88AQ3V6T2 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC17.58■□□□□ 0.41
CCDC88AQ3V6T2 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC88AQ3V6T2 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.58■□□□□ 0.41
CCDC88AQ3V6T2 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC17.58■□□□□ 0.41
CCDC88AQ3V6T2 LINC00554-201ENST00000564841 3011 ntBASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 CTSL-202ENST00000342020 933 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 AC103702.1-201ENST00000548801 2630 ntBASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC88AQ3V6T2 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 AL354702.1-201ENST00000442006 1960 ntBASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 OR51A9P-201ENST00000422578 911 ntBASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 AC136604.1-202ENST00000425471 771 ntBASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CCDC88AQ3V6T2 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 ACTG1P19-201ENST00000418987 1116 ntBASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms