Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 KRT17P5-201ENST00000332088 839 ntBASIC17■□□□□ 0.31
SHROOM1Q2M3G4 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 OR8T1P-201ENST00000421347 918 ntBASIC17■□□□□ 0.31
SHROOM1Q2M3G4 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 MBP-227ENST00000526111 581 ntTSL 4 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 WT1-AS_6.1-201ENST00000614919 121 ntBASIC17■□□□□ 0.31
SHROOM1Q2M3G4 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHROOM1Q2M3G4 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 DUTP3-201ENST00000450025 415 ntBASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 AC025262.2-201ENST00000623975 1056 ntBASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 HLA-DQB1-202ENST00000399079 1501 ntBASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
SHROOM1Q2M3G4 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 KRT18P9-201ENST00000604826 1300 ntBASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 FTH1P22-201ENST00000456305 520 ntBASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 AC104640.1-201ENST00000562617 2109 ntBASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 AC093752.3-201ENST00000567343 901 ntBASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 MIR4750-201ENST00000584564 56 ntBASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 AC005041.3-201ENST00000606287 649 ntBASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 AC009560.1-201ENST00000620208 434 ntBASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHROOM1Q2M3G4 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms