Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
MSX2P35548 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX2P35548 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
MSX2P35548 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
MSX2P35548 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.11□□□□□ -0.15
MSX2P35548 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX2P35548 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC14.11□□□□□ -0.15
MSX2P35548 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
MSX2P35548 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX2P35548 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
MSX2P35548 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX2P35548 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
MSX2P35548 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
MSX2P35548 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
MSX2P35548 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC14.11□□□□□ -0.15
MSX2P35548 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX2P35548 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX2P35548 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX2P35548 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.11□□□□□ -0.15
MSX2P35548 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.11□□□□□ -0.15
MSX2P35548 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX2P35548 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
MSX2P35548 GAPDHP40-201ENST00000505218 1006 ntBASIC14.11□□□□□ -0.15
MSX2P35548 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC14.11□□□□□ -0.15
MSX2P35548 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.11□□□□□ -0.15
MSX2P35548 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.11□□□□□ -0.15
MSX2P35548 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
MSX2P35548 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC14.11□□□□□ -0.15
MSX2P35548 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX2P35548 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.11□□□□□ -0.15
MSX2P35548 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC14.11□□□□□ -0.15
MSX2P35548 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX2P35548 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC14.11□□□□□ -0.15
MSX2P35548 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX2P35548 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.11□□□□□ -0.15
MSX2P35548 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC14.11□□□□□ -0.15
MSX2P35548 AL513210.1-201ENST00000629608 234 ntBASIC14.11□□□□□ -0.15
MSX2P35548 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
MSX2P35548 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC14.11□□□□□ -0.15
MSX2P35548 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC14.11□□□□□ -0.15
MSX2P35548 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC14.11□□□□□ -0.15
MSX2P35548 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX2P35548 BEND3P3-201ENST00000611030 2440 ntBASIC14.11□□□□□ -0.15
MSX2P35548 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC14.11□□□□□ -0.15
MSX2P35548 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.11□□□□□ -0.15
MSX2P35548 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
MSX2P35548 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX2P35548 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC14.1□□□□□ -0.15
MSX2P35548 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
MSX2P35548 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.1□□□□□ -0.15
MSX2P35548 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC14.1□□□□□ -0.15
MSX2P35548 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC14.1□□□□□ -0.15
MSX2P35548 OS9-218ENST00000551035 2246 ntTSL 2 BASIC14.1□□□□□ -0.15
MSX2P35548 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
MSX2P35548 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
MSX2P35548 STK25-235ENST00000543554 2556 ntTSL 2 BASIC14.1□□□□□ -0.15
MSX2P35548 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC14.1□□□□□ -0.15
MSX2P35548 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX2P35548 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC14.1□□□□□ -0.15
MSX2P35548 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms