Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC4P35249 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
RFC4P35249 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RFC4P35249 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC4P35249 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.23■□□□□ 0.51
RFC4P35249 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC4P35249 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
RFC4P35249 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RFC4P35249 AL591122.2-201ENST00000624125 1853 ntBASIC18.23■□□□□ 0.51
RFC4P35249 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC18.23■□□□□ 0.51
RFC4P35249 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RFC4P35249 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC18.23■□□□□ 0.51
RFC4P35249 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC18.23■□□□□ 0.51
RFC4P35249 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC18.23■□□□□ 0.51
RFC4P35249 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC18.23■□□□□ 0.51
RFC4P35249 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC18.23■□□□□ 0.51
RFC4P35249 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC18.23■□□□□ 0.51
RFC4P35249 PEBP1P2-201ENST00000603980 558 ntBASIC18.23■□□□□ 0.51
RFC4P35249 AC021016.3-201ENST00000608367 477 ntBASIC18.23■□□□□ 0.51
RFC4P35249 AL118522.1-201ENST00000611368 560 ntBASIC18.23■□□□□ 0.51
RFC4P35249 HMGB1P24-201ENST00000611897 328 ntBASIC18.23■□□□□ 0.51
RFC4P35249 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC4P35249 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RFC4P35249 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
RFC4P35249 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC4P35249 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC18.23■□□□□ 0.51
RFC4P35249 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.23■□□□□ 0.51
RFC4P35249 AC026691.1-201ENST00000602502 2017 ntBASIC18.23■□□□□ 0.51
RFC4P35249 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC4P35249 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
RFC4P35249 AC015688.4-201ENST00000580780 1647 ntBASIC18.23■□□□□ 0.51
RFC4P35249 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC4P35249 FLJ16779-201ENST00000612722 7638 ntBASIC18.23■□□□□ 0.51
RFC4P35249 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC4P35249 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC4P35249 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
RFC4P35249 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC4P35249 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RFC4P35249 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC18.22■□□□□ 0.51
RFC4P35249 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC18.22■□□□□ 0.51
RFC4P35249 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC18.22■□□□□ 0.51
RFC4P35249 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC4P35249 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC4P35249 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
RFC4P35249 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC18.22■□□□□ 0.51
RFC4P35249 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RFC4P35249 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RFC4P35249 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
RFC4P35249 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC18.22■□□□□ 0.51
RFC4P35249 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RFC4P35249 ACTG1P19-201ENST00000418987 1116 ntBASIC18.22■□□□□ 0.51
RFC4P35249 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC4P35249 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC18.22■□□□□ 0.51
RFC4P35249 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC18.22■□□□□ 0.51
RFC4P35249 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC18.22■□□□□ 0.51
RFC4P35249 HINT1-205ENST00000508488 703 ntTSL 2 BASIC18.22■□□□□ 0.51
RFC4P35249 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC18.22■□□□□ 0.51
RFC4P35249 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
RFC4P35249 THY1-209ENST00000580275 578 ntTSL 3 BASIC18.22■□□□□ 0.51
RFC4P35249 AP005212.2-201ENST00000584979 510 ntBASIC18.22■□□□□ 0.51
RFC4P35249 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC18.22■□□□□ 0.51
RFC4P35249 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC4P35249 AL133467.4-201ENST00000602953 725 ntBASIC18.22■□□□□ 0.51
RFC4P35249 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC18.22■□□□□ 0.51
RFC4P35249 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC4P35249 TMBIM7P-203ENST00000641617 1718 ntBASIC18.22■□□□□ 0.51
RFC4P35249 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC4P35249 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC4P35249 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RFC4P35249 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC4P35249 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC4P35249 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC4P35249 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC4P35249 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFC4P35249 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RFC4P35249 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC18.21■□□□□ 0.51
RFC4P35249 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFC4P35249 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RFC4P35249 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFC4P35249 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFC4P35249 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFC4P35249 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFC4P35249 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
RFC4P35249 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.51
RFC4P35249 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
RFC4P35249 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFC4P35249 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
RFC4P35249 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RFC4P35249 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC18.21■□□□□ 0.51
RFC4P35249 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
RFC4P35249 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFC4P35249 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFC4P35249 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFC4P35249 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC18.21■□□□□ 0.51
RFC4P35249 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RFC4P35249 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC18.21■□□□□ 0.51
RFC4P35249 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC18.21■□□□□ 0.51
RFC4P35249 SKA2-205ENST00000580541 689 ntTSL 3 BASIC18.21■□□□□ 0.51
RFC4P35249 EIF5AP2-201ENST00000585668 1047 ntBASIC18.21■□□□□ 0.51
RFC4P35249 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms