Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CIITAP33076 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CIITAP33076 WARS-203ENST00000358655 2466 ntTSL 2 BASIC16.48■□□□□ 0.23
CIITAP33076 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CIITAP33076 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CIITAP33076 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CIITAP33076 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CIITAP33076 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CIITAP33076 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC16.48■□□□□ 0.23
CIITAP33076 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CIITAP33076 GSN-209ENST00000449733 2702 ntTSL 2 BASIC16.48■□□□□ 0.23
CIITAP33076 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CIITAP33076 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CIITAP33076 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CIITAP33076 AC097359.2-201ENST00000604992 2389 ntBASIC16.48■□□□□ 0.23
CIITAP33076 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CIITAP33076 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CIITAP33076 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CIITAP33076 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC16.48■□□□□ 0.23
CIITAP33076 OR2R1P-201ENST00000441404 914 ntBASIC16.48■□□□□ 0.23
CIITAP33076 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC16.48■□□□□ 0.23
CIITAP33076 AC022494.1-201ENST00000466044 728 ntBASIC16.48■□□□□ 0.23
CIITAP33076 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC16.48■□□□□ 0.23
CIITAP33076 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC16.48■□□□□ 0.23
CIITAP33076 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC16.48■□□□□ 0.23
CIITAP33076 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC16.48■□□□□ 0.23
CIITAP33076 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC16.48■□□□□ 0.23
CIITAP33076 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC16.48■□□□□ 0.23
CIITAP33076 AC124068.2-201ENST00000569473 1109 ntBASIC16.48■□□□□ 0.23
CIITAP33076 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CIITAP33076 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC16.48■□□□□ 0.23
CIITAP33076 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC16.48■□□□□ 0.23
CIITAP33076 AC100757.4-201ENST00000626934 759 ntBASIC16.48■□□□□ 0.23
CIITAP33076 AL139099.5-201ENST00000635274 300 ntBASIC16.48■□□□□ 0.23
CIITAP33076 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CIITAP33076 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CIITAP33076 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CIITAP33076 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CIITAP33076 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CIITAP33076 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CIITAP33076 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CIITAP33076 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CIITAP33076 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC16.48■□□□□ 0.23
CIITAP33076 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC16.48■□□□□ 0.23
CIITAP33076 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
CIITAP33076 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC16.48■□□□□ 0.23
CIITAP33076 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CIITAP33076 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CIITAP33076 AC018629.1-201ENST00000623381 1736 ntBASIC16.48■□□□□ 0.23
CIITAP33076 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC16.47■□□□□ 0.23
CIITAP33076 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.47■□□□□ 0.23
CIITAP33076 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CIITAP33076 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC16.47■□□□□ 0.23
CIITAP33076 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC16.47■□□□□ 0.23
CIITAP33076 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.47■□□□□ 0.23
CIITAP33076 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC16.47■□□□□ 0.23
CIITAP33076 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC16.47■□□□□ 0.23
CIITAP33076 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC16.47■□□□□ 0.23
CIITAP33076 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CIITAP33076 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CIITAP33076 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CIITAP33076 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC16.47■□□□□ 0.23
CIITAP33076 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
CIITAP33076 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC16.47■□□□□ 0.23
CIITAP33076 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
CIITAP33076 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CIITAP33076 RN7SKP214-201ENST00000364208 315 ntBASIC16.47■□□□□ 0.23
CIITAP33076 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
CIITAP33076 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CIITAP33076 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CIITAP33076 REEP1-202ENST00000453231 940 ntTSL 2 BASIC16.47■□□□□ 0.23
CIITAP33076 SDHD-202ENST00000525291 790 ntTSL 3 BASIC16.47■□□□□ 0.23
CIITAP33076 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC16.47■□□□□ 0.23
CIITAP33076 PGAM1P5-201ENST00000548011 764 ntBASIC16.47■□□□□ 0.23
CIITAP33076 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
CIITAP33076 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC16.47■□□□□ 0.23
CIITAP33076 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC16.47■□□□□ 0.23
CIITAP33076 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
CIITAP33076 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CIITAP33076 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CIITAP33076 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CIITAP33076 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC16.47■□□□□ 0.23
CIITAP33076 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CIITAP33076 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CIITAP33076 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CIITAP33076 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
CIITAP33076 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CIITAP33076 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC16.46■□□□□ 0.23
CIITAP33076 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC16.46■□□□□ 0.23
CIITAP33076 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
CIITAP33076 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CIITAP33076 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
CIITAP33076 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CIITAP33076 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CIITAP33076 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CIITAP33076 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CIITAP33076 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.46■□□□□ 0.23
CIITAP33076 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CIITAP33076 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC16.46■□□□□ 0.23
CIITAP33076 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms