Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
PTPN4P29074 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.88□□□□□ -0.03
PTPN4P29074 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC14.88□□□□□ -0.03
PTPN4P29074 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
PTPN4P29074 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.88□□□□□ -0.03
PTPN4P29074 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
PTPN4P29074 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
PTPN4P29074 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.88□□□□□ -0.03
PTPN4P29074 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.88□□□□□ -0.03
PTPN4P29074 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.88□□□□□ -0.03
PTPN4P29074 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC14.88□□□□□ -0.03
PTPN4P29074 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC14.88□□□□□ -0.03
PTPN4P29074 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.88□□□□□ -0.03
PTPN4P29074 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.88□□□□□ -0.03
PTPN4P29074 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.88□□□□□ -0.03
PTPN4P29074 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.88□□□□□ -0.03
PTPN4P29074 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.88□□□□□ -0.03
PTPN4P29074 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.88□□□□□ -0.03
PTPN4P29074 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.88□□□□□ -0.03
PTPN4P29074 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.88□□□□□ -0.03
PTPN4P29074 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.88□□□□□ -0.03
PTPN4P29074 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC14.88□□□□□ -0.03
PTPN4P29074 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC14.88□□□□□ -0.03
PTPN4P29074 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC14.88□□□□□ -0.03
PTPN4P29074 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.88□□□□□ -0.03
PTPN4P29074 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.88□□□□□ -0.03
PTPN4P29074 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
PTPN4P29074 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC14.88□□□□□ -0.03
PTPN4P29074 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN4P29074 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
PTPN4P29074 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN4P29074 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN4P29074 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN4P29074 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN4P29074 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN4P29074 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
PTPN4P29074 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN4P29074 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.87□□□□□ -0.03
PTPN4P29074 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN4P29074 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN4P29074 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN4P29074 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
PTPN4P29074 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN4P29074 BOLA2P3-201ENST00000404566 256 ntBASIC14.87□□□□□ -0.03
PTPN4P29074 AC074338.1-201ENST00000416825 156 ntBASIC14.87□□□□□ -0.03
PTPN4P29074 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.87□□□□□ -0.03
PTPN4P29074 KRT43P-201ENST00000434019 910 ntBASIC14.87□□□□□ -0.03
PTPN4P29074 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.87□□□□□ -0.03
PTPN4P29074 AL162726.2-201ENST00000438986 1017 ntBASIC14.87□□□□□ -0.03
PTPN4P29074 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.87□□□□□ -0.03
PTPN4P29074 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.87□□□□□ -0.03
PTPN4P29074 AP005482.1-201ENST00000563722 1273 ntBASIC14.87□□□□□ -0.03
PTPN4P29074 BTNL10-201ENST00000595971 695 ntBASIC14.87□□□□□ -0.03
PTPN4P29074 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.87□□□□□ -0.03
PTPN4P29074 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.87□□□□□ -0.03
PTPN4P29074 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.87□□□□□ -0.03
PTPN4P29074 MIR6799-201ENST00000620297 69 ntBASIC14.87□□□□□ -0.03
PTPN4P29074 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC14.87□□□□□ -0.03
PTPN4P29074 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN4P29074 REXO1L4P-201ENST00000605109 1937 ntBASIC14.87□□□□□ -0.03
PTPN4P29074 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.87□□□□□ -0.03
PTPN4P29074 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN4P29074 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
PTPN4P29074 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC14.87□□□□□ -0.03
PTPN4P29074 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.87□□□□□ -0.03
PTPN4P29074 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN4P29074 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN4P29074 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN4P29074 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
PTPN4P29074 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN4P29074 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
PTPN4P29074 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN4P29074 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
PTPN4P29074 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.86□□□□□ -0.03
PTPN4P29074 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
PTPN4P29074 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC14.86□□□□□ -0.03
PTPN4P29074 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.86□□□□□ -0.03
PTPN4P29074 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms