Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC17.87■□□□□ 0.45
COL5A3P25940 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC17.87■□□□□ 0.45
COL5A3P25940 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A3P25940 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC17.87■□□□□ 0.45
COL5A3P25940 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.87■□□□□ 0.45
COL5A3P25940 RN7SL832P-201ENST00000607781 1756 ntBASIC17.87■□□□□ 0.45
COL5A3P25940 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC17.87■□□□□ 0.45
COL5A3P25940 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A3P25940 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC17.87■□□□□ 0.45
COL5A3P25940 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.87■□□□□ 0.45
COL5A3P25940 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A3P25940 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A3P25940 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A3P25940 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A3P25940 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A3P25940 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A3P25940 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
COL5A3P25940 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A3P25940 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC17.87■□□□□ 0.45
COL5A3P25940 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC17.87■□□□□ 0.45
COL5A3P25940 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
COL5A3P25940 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC17.86■□□□□ 0.45
COL5A3P25940 NALT1-202ENST00000450304 437 ntTSL 3 BASIC17.86■□□□□ 0.45
COL5A3P25940 MT3-202ENST00000561640 514 ntTSL 3 BASIC17.86■□□□□ 0.45
COL5A3P25940 AL590235.1-201ENST00000564650 861 ntBASIC17.86■□□□□ 0.45
COL5A3P25940 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC17.86■□□□□ 0.45
COL5A3P25940 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A3P25940 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC17.86■□□□□ 0.45
COL5A3P25940 URAHP-205ENST00000610227 398 ntBASIC17.86■□□□□ 0.45
COL5A3P25940 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC17.86■□□□□ 0.45
COL5A3P25940 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC17.86■□□□□ 0.45
COL5A3P25940 AC020904.3-201ENST00000624199 442 ntBASIC17.86■□□□□ 0.45
COL5A3P25940 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC17.86■□□□□ 0.45
COL5A3P25940 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A3P25940 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A3P25940 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A3P25940 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
COL5A3P25940 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A3P25940 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A3P25940 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.86■□□□□ 0.45
COL5A3P25940 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
COL5A3P25940 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A3P25940 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A3P25940 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
COL5A3P25940 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A3P25940 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
COL5A3P25940 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
COL5A3P25940 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC17.86■□□□□ 0.45
COL5A3P25940 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A3P25940 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
COL5A3P25940 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
COL5A3P25940 RNA5SP491-201ENST00000362936 118 ntBASIC17.86■□□□□ 0.45
COL5A3P25940 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC17.86■□□□□ 0.45
COL5A3P25940 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC17.86■□□□□ 0.45
COL5A3P25940 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC17.86■□□□□ 0.45
COL5A3P25940 VDAC1P11-201ENST00000458323 852 ntBASIC17.86■□□□□ 0.45
COL5A3P25940 AC100858.1-201ENST00000514059 1228 ntBASIC17.86■□□□□ 0.45
COL5A3P25940 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
COL5A3P25940 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A3P25940 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC17.86■□□□□ 0.45
COL5A3P25940 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC17.86■□□□□ 0.45
COL5A3P25940 TCAF2P1-201ENST00000291129 2421 ntBASIC17.86■□□□□ 0.45
COL5A3P25940 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A3P25940 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A3P25940 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.86■□□□□ 0.45
COL5A3P25940 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A3P25940 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC17.85■□□□□ 0.45
COL5A3P25940 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC17.85■□□□□ 0.45
COL5A3P25940 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A3P25940 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A3P25940 AC007952.5-201ENST00000572818 1486 ntBASIC17.85■□□□□ 0.45
COL5A3P25940 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A3P25940 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC17.85■□□□□ 0.45
COL5A3P25940 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.85■□□□□ 0.45
COL5A3P25940 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
COL5A3P25940 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A3P25940 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC17.85■□□□□ 0.45
COL5A3P25940 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A3P25940 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
COL5A3P25940 AL157823.1-201ENST00000403727 628 ntBASIC17.85■□□□□ 0.45
COL5A3P25940 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A3P25940 AC004522.1-201ENST00000419978 654 ntBASIC17.85■□□□□ 0.45
COL5A3P25940 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC17.85■□□□□ 0.45
COL5A3P25940 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
COL5A3P25940 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A3P25940 GOLGA2P8-201ENST00000505201 779 ntBASIC17.85■□□□□ 0.45
COL5A3P25940 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC17.85■□□□□ 0.45
COL5A3P25940 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC17.85■□□□□ 0.45
COL5A3P25940 PRMT1P1-201ENST00000604252 1009 ntBASIC17.85■□□□□ 0.45
COL5A3P25940 PTPN20CP-201ENST00000614090 920 ntBASIC17.85■□□□□ 0.45
COL5A3P25940 AC010531.8-201ENST00000623341 685 ntBASIC17.85■□□□□ 0.45
COL5A3P25940 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A3P25940 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC17.85■□□□□ 0.45
COL5A3P25940 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A3P25940 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A3P25940 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A3P25940 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A3P25940 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A3P25940 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC17.85■□□□□ 0.45
COL5A3P25940 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms