Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 TPM3P8-201ENST00000330554 643 ntBASIC14.03□□□□□ -0.16
SDC1P18827 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.03□□□□□ -0.16
SDC1P18827 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.03□□□□□ -0.16
SDC1P18827 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 AP006294.1-201ENST00000415407 339 ntBASIC14.03□□□□□ -0.16
SDC1P18827 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
SDC1P18827 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 AC025279.2-201ENST00000569730 653 ntBASIC14.03□□□□□ -0.16
SDC1P18827 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.03□□□□□ -0.16
SDC1P18827 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.03□□□□□ -0.16
SDC1P18827 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
SDC1P18827 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
SDC1P18827 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
SDC1P18827 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
SDC1P18827 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.03□□□□□ -0.16
SDC1P18827 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
SDC1P18827 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC14.03□□□□□ -0.16
SDC1P18827 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.03□□□□□ -0.16
SDC1P18827 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDC1P18827 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SDC1P18827 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.02□□□□□ -0.16
SDC1P18827 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SDC1P18827 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SDC1P18827 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SDC1P18827 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
SDC1P18827 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
SDC1P18827 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
SDC1P18827 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SDC1P18827 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
SDC1P18827 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.16
SDC1P18827 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC14.02□□□□□ -0.16
SDC1P18827 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SDC1P18827 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC14.02□□□□□ -0.16
SDC1P18827 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SDC1P18827 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
SDC1P18827 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.02□□□□□ -0.16
SDC1P18827 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
SDC1P18827 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SDC1P18827 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SDC1P18827 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
SDC1P18827 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
SDC1P18827 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SDC1P18827 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.02□□□□□ -0.16
SDC1P18827 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SDC1P18827 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
SDC1P18827 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
SDC1P18827 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SDC1P18827 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.02□□□□□ -0.17
SDC1P18827 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SDC1P18827 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SDC1P18827 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SDC1P18827 GUK1-206ENST00000366723 845 ntTSL 5 BASIC14.02□□□□□ -0.17
SDC1P18827 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SDC1P18827 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.02□□□□□ -0.17
SDC1P18827 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.02□□□□□ -0.17
SDC1P18827 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.02□□□□□ -0.17
SDC1P18827 TMEM198B-204ENST00000484016 896 ntBASIC14.02□□□□□ -0.17
SDC1P18827 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.02□□□□□ -0.17
SDC1P18827 AP003171.2-201ENST00000528208 925 ntBASIC14.02□□□□□ -0.17
SDC1P18827 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.02□□□□□ -0.17
SDC1P18827 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SDC1P18827 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.02□□□□□ -0.17
SDC1P18827 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
SDC1P18827 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
SDC1P18827 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.02□□□□□ -0.17
SDC1P18827 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SDC1P18827 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
SDC1P18827 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.02□□□□□ -0.17
SDC1P18827 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
SDC1P18827 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SDC1P18827 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SDC1P18827 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SDC1P18827 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SDC1P18827 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SDC1P18827 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SDC1P18827 AC090643.2-201ENST00000623442 2029 ntBASIC14.02□□□□□ -0.17
SDC1P18827 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
SDC1P18827 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
SDC1P18827 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
SDC1P18827 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 DDC-213ENST00000617822 1809 ntTSL 3 BASIC14.01□□□□□ -0.17
SDC1P18827 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
SDC1P18827 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms