Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VCANP13611 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC14.77□□□□□ -0.04
VCANP13611 AL136982.5-201ENST00000605222 294 ntBASIC14.77□□□□□ -0.04
VCANP13611 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC14.77□□□□□ -0.04
VCANP13611 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VCANP13611 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VCANP13611 AL365181.1-201ENST00000564032 1828 ntBASIC14.77□□□□□ -0.04
VCANP13611 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
VCANP13611 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VCANP13611 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
VCANP13611 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VCANP13611 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VCANP13611 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VCANP13611 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC14.77□□□□□ -0.04
VCANP13611 AP000244.1-201ENST00000424582 201 ntBASIC14.77□□□□□ -0.04
VCANP13611 OR52X1P-201ENST00000446117 914 ntBASIC14.77□□□□□ -0.04
VCANP13611 AACSP1-202ENST00000521412 1095 ntBASIC14.77□□□□□ -0.04
VCANP13611 MED25-209ENST00000612791 881 ntTSL 5 BASIC14.77□□□□□ -0.04
VCANP13611 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.77□□□□□ -0.04
VCANP13611 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VCANP13611 AC007952.5-201ENST00000572818 1486 ntBASIC14.77□□□□□ -0.05
VCANP13611 TEKT4P2-202ENST00000559466 1312 ntBASIC14.77□□□□□ -0.05
VCANP13611 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC14.77□□□□□ -0.05
VCANP13611 AC097474.1-201ENST00000506481 1371 ntBASIC14.77□□□□□ -0.05
VCANP13611 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VCANP13611 OAZ3-201ENST00000321531 851 ntTSL 5 BASIC14.77□□□□□ -0.05
VCANP13611 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC14.77□□□□□ -0.05
VCANP13611 C3orf84-201ENST00000432035 669 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.05
VCANP13611 RNU1-80P-201ENST00000459500 161 ntBASIC14.77□□□□□ -0.05
VCANP13611 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC14.77□□□□□ -0.05
VCANP13611 GRAMD4P6-201ENST00000556999 244 ntBASIC14.77□□□□□ -0.05
VCANP13611 RN7SL202P-201ENST00000584410 262 ntBASIC14.77□□□□□ -0.05
VCANP13611 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
VCANP13611 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VCANP13611 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VCANP13611 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VCANP13611 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VCANP13611 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
VCANP13611 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VCANP13611 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VCANP13611 ASS1P1-201ENST00000402854 1237 ntBASIC14.76□□□□□ -0.05
VCANP13611 RIBC1-203ENST00000414955 1281 ntTSL 2 BASIC14.76□□□□□ -0.05
VCANP13611 AL136084.1-201ENST00000449172 318 ntBASIC14.76□□□□□ -0.05
VCANP13611 IMMP1L-215ENST00000534812 612 ntTSL 2 BASIC14.76□□□□□ -0.05
VCANP13611 GABARAPL1-203ENST00000535576 792 ntTSL 5 BASIC14.76□□□□□ -0.05
VCANP13611 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC14.76□□□□□ -0.05
VCANP13611 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC14.76□□□□□ -0.05
VCANP13611 AL132994.1-201ENST00000554098 400 ntBASIC14.76□□□□□ -0.05
VCANP13611 AC008764.4-207ENST00000600705 956 ntTSL 2 BASIC14.76□□□□□ -0.05
VCANP13611 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC14.76□□□□□ -0.05
VCANP13611 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.76□□□□□ -0.05
VCANP13611 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.76□□□□□ -0.05
VCANP13611 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.76□□□□□ -0.05
VCANP13611 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.76□□□□□ -0.05
VCANP13611 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.76□□□□□ -0.05
VCANP13611 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.76□□□□□ -0.05
VCANP13611 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.76□□□□□ -0.05
VCANP13611 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC14.76□□□□□ -0.05
VCANP13611 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC14.76□□□□□ -0.05
VCANP13611 BX322562.1-201ENST00000617004 561 ntBASIC14.76□□□□□ -0.05
VCANP13611 AC009041.4-201ENST00000620075 638 ntBASIC14.76□□□□□ -0.05
VCANP13611 SSR4P1-203ENST00000599569 2260 ntBASIC14.76□□□□□ -0.05
VCANP13611 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.76□□□□□ -0.05
VCANP13611 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.76□□□□□ -0.05
VCANP13611 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VCANP13611 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC14.76□□□□□ -0.05
VCANP13611 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
VCANP13611 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
VCANP13611 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC14.76□□□□□ -0.05
VCANP13611 SELENOK-205ENST00000541726 814 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
VCANP13611 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
VCANP13611 AL139317.2-201ENST00000556998 158 ntBASIC14.76□□□□□ -0.05
VCANP13611 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC14.76□□□□□ -0.05
VCANP13611 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
VCANP13611 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
VCANP13611 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.76□□□□□ -0.05
VCANP13611 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
VCANP13611 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC14.75□□□□□ -0.05
VCANP13611 LINC02447-202ENST00000501888 2146 ntBASIC14.75□□□□□ -0.05
VCANP13611 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.75□□□□□ -0.05
VCANP13611 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.75□□□□□ -0.05
VCANP13611 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.75□□□□□ -0.05
VCANP13611 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC14.75□□□□□ -0.05
VCANP13611 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VCANP13611 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VCANP13611 AC245128.1-201ENST00000400864 1294 ntTSL 5 BASIC14.75□□□□□ -0.05
VCANP13611 KDM5C-IT1-201ENST00000412242 755 ntTSL 5 BASIC14.75□□□□□ -0.05
VCANP13611 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC14.75□□□□□ -0.05
VCANP13611 OR4C14P-201ENST00000440929 923 ntBASIC14.75□□□□□ -0.05
VCANP13611 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC14.75□□□□□ -0.05
VCANP13611 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
VCANP13611 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VCANP13611 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
VCANP13611 AL596087.1-201ENST00000400979 1969 ntBASIC14.75□□□□□ -0.05
VCANP13611 ZC3H8-201ENST00000272570 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
VCANP13611 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
VCANP13611 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
VCANP13611 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VCANP13611 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VCANP13611 JTB-202ENST00000356648 1040 ntTSL 2 BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms