Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC11.46□□□□□ -0.58
CXCL1P09341 H1FX-AS1-201ENST00000383461 2600 ntTSL 2 BASIC11.46□□□□□ -0.58
CXCL1P09341 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.58
CXCL1P09341 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
CXCL1P09341 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
CXCL1P09341 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC11.46□□□□□ -0.58
CXCL1P09341 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC11.46□□□□□ -0.58
CXCL1P09341 RAB37-203ENST00000392612 2528 ntTSL 2 BASIC11.46□□□□□ -0.58
CXCL1P09341 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
CXCL1P09341 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
CXCL1P09341 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
CXCL1P09341 DNM1-213ENST00000628346 3835 ntAPPRIS ALT1 TSL 5 BASIC11.46□□□□□ -0.58
CXCL1P09341 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.58
CXCL1P09341 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
CXCL1P09341 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
CXCL1P09341 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC11.45□□□□□ -0.58
CXCL1P09341 SESN2-201ENST00000253063 3453 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 HOXB13-201ENST00000290295 3467 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 AP3S2-216ENST00000617003 1561 ntBASIC11.45□□□□□ -0.58
CXCL1P09341 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 BAIAP3-203ENST00000421665 3875 ntTSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC11.45□□□□□ -0.58
CXCL1P09341 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 WARS-203ENST00000358655 2466 ntTSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 LILRP1-201ENST00000444199 1370 ntBASIC11.45□□□□□ -0.58
CXCL1P09341 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 ZHX2-201ENST00000314393 4624 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 TCAF2-205ENST00000444908 2976 ntTSL 5 BASIC11.45□□□□□ -0.58
CXCL1P09341 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
CXCL1P09341 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
CXCL1P09341 DDX12P-201ENST00000432996 2947 ntBASIC11.45□□□□□ -0.58
CXCL1P09341 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 ZNF568-206ENST00000455427 2378 ntTSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
CXCL1P09341 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 FAAHP1-202ENST00000446499 1238 ntBASIC11.45□□□□□ -0.58
CXCL1P09341 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC11.45□□□□□ -0.58
CXCL1P09341 UNC93B7-201ENST00000509439 705 ntBASIC11.45□□□□□ -0.58
CXCL1P09341 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC11.45□□□□□ -0.58
CXCL1P09341 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC11.45□□□□□ -0.58
CXCL1P09341 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 CALM3-211ENST00000598871 561 ntTSL 4 BASIC11.45□□□□□ -0.58
CXCL1P09341 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 ANKRD49-210ENST00000544612 2268 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 TNRC18P1-201ENST00000502875 3650 ntBASIC11.45□□□□□ -0.58
CXCL1P09341 DLL1-201ENST00000366756 3174 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 USO1-201ENST00000264904 4135 ntTSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 CDK5RAP1-203ENST00000357886 2164 ntTSL 5 BASIC11.45□□□□□ -0.58
CXCL1P09341 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
CXCL1P09341 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 BRAP-202ENST00000419234 4026 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 ANGPTL2-201ENST00000373417 2575 ntTSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 TOX2-203ENST00000372999 2519 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 TMOD1-202ENST00000375175 2516 ntTSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 CYB561D1-206ENST00000496961 3424 ntTSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 ELN-204ENST00000357036 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC11.45□□□□□ -0.58
CXCL1P09341 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 TRPC7-202ENST00000378459 2406 ntTSL 5 BASIC11.45□□□□□ -0.58
CXCL1P09341 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC11.45□□□□□ -0.58
CXCL1P09341 KCNJ11-201ENST00000339994 2801 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
CXCL1P09341 NFKB1-202ENST00000394820 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
CXCL1P09341 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
CXCL1P09341 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
CXCL1P09341 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
CXCL1P09341 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
CXCL1P09341 MARCH10-201ENST00000311269 3090 ntAPPRIS P3 TSL 2 BASIC11.44□□□□□ -0.58
CXCL1P09341 DAXX-202ENST00000374542 2613 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
CXCL1P09341 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC11.44□□□□□ -0.58
CXCL1P09341 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
CXCL1P09341 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC11.44□□□□□ -0.58
CXCL1P09341 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC11.44□□□□□ -0.58
CXCL1P09341 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
CXCL1P09341 AC018665.1-201ENST00000622927 1362 ntBASIC11.44□□□□□ -0.58
CXCL1P09341 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
CXCL1P09341 CASS4-202ENST00000434344 2888 ntTSL 2 BASIC11.44□□□□□ -0.58
CXCL1P09341 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC11.44□□□□□ -0.58
CXCL1P09341 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
CXCL1P09341 TMBIM1-202ENST00000396809 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
CXCL1P09341 BAG6-247ENST00000439687 3104 ntTSL 2 BASIC11.44□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms