Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA1O95477 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA1O95477 RN7SL8P-201ENST00000461771 266 ntBASIC12.43□□□□□ -0.42
ABCA1O95477 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA1O95477 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC12.43□□□□□ -0.42
ABCA1O95477 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC12.43□□□□□ -0.42
ABCA1O95477 AC011491.1-203ENST00000637688 543 ntBASIC12.43□□□□□ -0.42
ABCA1O95477 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
ABCA1O95477 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
ABCA1O95477 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
ABCA1O95477 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
ABCA1O95477 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC12.43□□□□□ -0.42
ABCA1O95477 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC12.43□□□□□ -0.42
ABCA1O95477 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA1O95477 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC12.43□□□□□ -0.42
ABCA1O95477 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
ABCA1O95477 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA1O95477 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC12.43□□□□□ -0.42
ABCA1O95477 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
ABCA1O95477 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC12.42□□□□□ -0.42
ABCA1O95477 DUX4L47-201ENST00000566374 394 ntBASIC12.42□□□□□ -0.42
ABCA1O95477 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
ABCA1O95477 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC12.42□□□□□ -0.42
ABCA1O95477 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC12.42□□□□□ -0.42
ABCA1O95477 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 SNX18-202ENST00000343017 3140 ntBASIC12.42□□□□□ -0.42
ABCA1O95477 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
ABCA1O95477 OR2I1P-210ENST00000642037 4691 ntBASIC12.42□□□□□ -0.42
ABCA1O95477 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC12.42□□□□□ -0.42
ABCA1O95477 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC12.42□□□□□ -0.42
ABCA1O95477 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
ABCA1O95477 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
ABCA1O95477 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
ABCA1O95477 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC12.42□□□□□ -0.42
ABCA1O95477 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
ABCA1O95477 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
ABCA1O95477 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 AK6-201ENST00000380818 1183 ntTSL 2 BASIC12.42□□□□□ -0.42
ABCA1O95477 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC12.42□□□□□ -0.42
ABCA1O95477 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC12.42□□□□□ -0.42
ABCA1O95477 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC12.42□□□□□ -0.42
ABCA1O95477 AC025181.2-201ENST00000606994 802 ntBASIC12.42□□□□□ -0.42
ABCA1O95477 AL805961.1-201ENST00000642026 753 ntBASIC12.42□□□□□ -0.42
ABCA1O95477 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC12.42□□□□□ -0.42
ABCA1O95477 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
ABCA1O95477 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC12.42□□□□□ -0.42
ABCA1O95477 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC12.42□□□□□ -0.42
ABCA1O95477 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC12.42□□□□□ -0.42
ABCA1O95477 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC12.42□□□□□ -0.42
ABCA1O95477 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
ABCA1O95477 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC12.42□□□□□ -0.42
ABCA1O95477 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 ANTXR2-203ENST00000403729 8273 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
ABCA1O95477 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA1O95477 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
ABCA1O95477 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms