Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
NKX2-2O95096 TCAM1P-207ENST00000485295 1537 ntBASIC13.55□□□□□ -0.24
NKX2-2O95096 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.55□□□□□ -0.24
NKX2-2O95096 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC13.55□□□□□ -0.24
NKX2-2O95096 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.55□□□□□ -0.24
NKX2-2O95096 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC13.55□□□□□ -0.24
NKX2-2O95096 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.55□□□□□ -0.24
NKX2-2O95096 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC13.55□□□□□ -0.24
NKX2-2O95096 TISP43-201ENST00000409793 538 ntTSL 4 BASIC13.55□□□□□ -0.24
NKX2-2O95096 AL161932.2-201ENST00000435436 679 ntBASIC13.55□□□□□ -0.24
NKX2-2O95096 AL157407.1-201ENST00000435784 904 ntBASIC13.55□□□□□ -0.24
NKX2-2O95096 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC13.55□□□□□ -0.24
NKX2-2O95096 KRT223P-202ENST00000449164 1292 ntBASIC13.55□□□□□ -0.24
NKX2-2O95096 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC13.55□□□□□ -0.24
NKX2-2O95096 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.55□□□□□ -0.24
NKX2-2O95096 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.55□□□□□ -0.24
NKX2-2O95096 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC13.55□□□□□ -0.24
NKX2-2O95096 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC13.55□□□□□ -0.24
NKX2-2O95096 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC13.55□□□□□ -0.24
NKX2-2O95096 MIR4783-201ENST00000580343 82 ntBASIC13.55□□□□□ -0.24
NKX2-2O95096 EEF1DP1-201ENST00000585891 896 ntBASIC13.55□□□□□ -0.24
NKX2-2O95096 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.55□□□□□ -0.24
NKX2-2O95096 AC017083.2-201ENST00000608069 979 ntBASIC13.55□□□□□ -0.24
NKX2-2O95096 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC13.55□□□□□ -0.24
NKX2-2O95096 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.55□□□□□ -0.24
NKX2-2O95096 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC13.55□□□□□ -0.24
NKX2-2O95096 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX2-2O95096 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC13.54□□□□□ -0.24
NKX2-2O95096 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
NKX2-2O95096 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
NKX2-2O95096 AL645933.1-201ENST00000440087 609 ntBASIC13.54□□□□□ -0.24
NKX2-2O95096 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.54□□□□□ -0.24
NKX2-2O95096 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC13.54□□□□□ -0.24
NKX2-2O95096 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC13.54□□□□□ -0.24
NKX2-2O95096 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC13.54□□□□□ -0.24
NKX2-2O95096 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC13.54□□□□□ -0.24
NKX2-2O95096 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC13.54□□□□□ -0.24
NKX2-2O95096 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.54□□□□□ -0.24
NKX2-2O95096 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.54□□□□□ -0.24
NKX2-2O95096 AC104506.1-201ENST00000609247 429 ntBASIC13.54□□□□□ -0.24
NKX2-2O95096 MIR6720-201ENST00000611664 98 ntBASIC13.54□□□□□ -0.24
NKX2-2O95096 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC13.54□□□□□ -0.24
NKX2-2O95096 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.54□□□□□ -0.24
NKX2-2O95096 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC13.54□□□□□ -0.24
NKX2-2O95096 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC13.54□□□□□ -0.24
NKX2-2O95096 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX2-2O95096 HSPA8P5-201ENST00000456928 2069 ntBASIC13.54□□□□□ -0.24
NKX2-2O95096 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
NKX2-2O95096 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-2O95096 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC13.53□□□□□ -0.24
NKX2-2O95096 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC13.53□□□□□ -0.24
NKX2-2O95096 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
NKX2-2O95096 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX2-2O95096 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC13.53□□□□□ -0.24
NKX2-2O95096 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
NKX2-2O95096 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms