Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC11.13□□□□□ -0.63
COL6A5A8TX70 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 AC069224.1-201ENST00000566372 1715 ntBASIC11.13□□□□□ -0.63
COL6A5A8TX70 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
COL6A5A8TX70 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC11.12□□□□□ -0.63
COL6A5A8TX70 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 C6orf203-201ENST00000311381 900 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 SSR4-202ENST00000370085 526 ntTSL 2 BASIC11.12□□□□□ -0.63
COL6A5A8TX70 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 RPL5P21-201ENST00000404620 815 ntBASIC11.12□□□□□ -0.63
COL6A5A8TX70 AC005740.1-201ENST00000515639 522 ntBASIC11.12□□□□□ -0.63
COL6A5A8TX70 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 KLF17P1-201ENST00000547105 1126 ntBASIC11.12□□□□□ -0.63
COL6A5A8TX70 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 AC138627.1-201ENST00000641127 1257 ntBASIC11.12□□□□□ -0.63
COL6A5A8TX70 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC11.12□□□□□ -0.63
COL6A5A8TX70 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC11.12□□□□□ -0.63
COL6A5A8TX70 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC11.12□□□□□ -0.63
COL6A5A8TX70 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC11.12□□□□□ -0.63
COL6A5A8TX70 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 SERHL2-201ENST00000327678 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC11.12□□□□□ -0.63
COL6A5A8TX70 AC012370.2-204ENST00000601940 1320 ntTSL 5 BASIC11.12□□□□□ -0.63
COL6A5A8TX70 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC11.12□□□□□ -0.63
COL6A5A8TX70 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 CRYZL1-205ENST00000399442 612 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 U3.41-201ENST00000408711 219 ntBASIC11.12□□□□□ -0.63
COL6A5A8TX70 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 AC000078.1-201ENST00000420617 682 ntBASIC11.12□□□□□ -0.63
COL6A5A8TX70 AC103563.1-201ENST00000429316 123 ntBASIC11.12□□□□□ -0.63
COL6A5A8TX70 CCND3P1-201ENST00000438347 580 ntBASIC11.12□□□□□ -0.63
COL6A5A8TX70 AL450346.2-201ENST00000495602 1024 ntBASIC11.12□□□□□ -0.63
COL6A5A8TX70 IQSEC2-205ENST00000498281 673 ntTSL 3 BASIC11.12□□□□□ -0.63
COL6A5A8TX70 OR52V1P-201ENST00000515557 898 ntBASIC11.12□□□□□ -0.63
COL6A5A8TX70 AC024405.2-201ENST00000528459 810 ntTSL 5 BASIC11.12□□□□□ -0.63
COL6A5A8TX70 CACNA1C-IT3-201ENST00000542680 622 ntTSL 3 BASIC11.12□□□□□ -0.63
COL6A5A8TX70 BATF-202ENST00000555504 361 ntTSL 2 BASIC11.12□□□□□ -0.63
COL6A5A8TX70 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC11.12□□□□□ -0.63
COL6A5A8TX70 MIR6165-201ENST00000614803 84 ntBASIC11.12□□□□□ -0.63
COL6A5A8TX70 AC091769.1-201ENST00000619576 568 ntBASIC11.12□□□□□ -0.63
COL6A5A8TX70 AC134878.2-201ENST00000620700 1265 ntBASIC11.12□□□□□ -0.63
COL6A5A8TX70 AC048382.6-201ENST00000621980 1223 ntBASIC11.12□□□□□ -0.63
COL6A5A8TX70 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC11.12□□□□□ -0.63
COL6A5A8TX70 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
COL6A5A8TX70 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC11.12□□□□□ -0.63
COL6A5A8TX70 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC11.12□□□□□ -0.63
COL6A5A8TX70 AL590440.2-201ENST00000641973 1595 ntBASIC11.12□□□□□ -0.63
COL6A5A8TX70 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
COL6A5A8TX70 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 SPINK2-201ENST00000248701 613 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 AC073210.1-201ENST00000414799 232 ntBASIC11.11□□□□□ -0.63
COL6A5A8TX70 OR52X1P-201ENST00000446117 914 ntBASIC11.11□□□□□ -0.63
COL6A5A8TX70 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC11.11□□□□□ -0.63
COL6A5A8TX70 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
COL6A5A8TX70 LILRP1-201ENST00000444199 1370 ntBASIC11.11□□□□□ -0.63
COL6A5A8TX70 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms