Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 SERF2-209ENST00000409646 559 ntTSL 4 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 BAATP1-201ENST00000412284 1225 ntBASIC11.97□□□□□ -0.49
FOXA2Q9Y261 KLF2P2-201ENST00000416807 1039 ntBASIC11.97□□□□□ -0.49
FOXA2Q9Y261 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 AL355864.2-201ENST00000447420 863 ntBASIC11.97□□□□□ -0.49
FOXA2Q9Y261 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 AC093433.1-201ENST00000458048 571 ntBASIC11.97□□□□□ -0.49
FOXA2Q9Y261 AC022137.2-201ENST00000503482 481 ntBASIC11.97□□□□□ -0.49
FOXA2Q9Y261 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 WARS-203ENST00000358655 2466 ntTSL 2 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 AC010327.5-201ENST00000586923 3061 ntBASIC11.97□□□□□ -0.49
FOXA2Q9Y261 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA2Q9Y261 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 AC011840.2-201ENST00000563063 1520 ntBASIC11.96□□□□□ -0.49
FOXA2Q9Y261 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 AC003102.2-201ENST00000589195 1469 ntBASIC11.96□□□□□ -0.49
FOXA2Q9Y261 AC020910.6-201ENST00000623084 1459 ntBASIC11.96□□□□□ -0.49
FOXA2Q9Y261 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 AL136172.1-201ENST00000598590 1394 ntBASIC11.96□□□□□ -0.49
FOXA2Q9Y261 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 KRT8P35-201ENST00000483942 1338 ntBASIC11.96□□□□□ -0.49
FOXA2Q9Y261 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 AC012441.1-201ENST00000446669 685 ntBASIC11.96□□□□□ -0.49
FOXA2Q9Y261 RBM7-207ENST00000544582 692 ntTSL 3 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 AC132938.2-201ENST00000579188 680 ntBASIC11.96□□□□□ -0.49
FOXA2Q9Y261 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 AL591163.1-201ENST00000641757 987 ntBASIC11.96□□□□□ -0.49
FOXA2Q9Y261 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 USE1-206ENST00000595101 1776 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 RN7SL832P-201ENST00000607781 1756 ntBASIC11.96□□□□□ -0.49
FOXA2Q9Y261 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA2Q9Y261 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA2Q9Y261 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC11.96□□□□□ -0.5
FOXA2Q9Y261 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA2Q9Y261 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms