Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 RERG-205ENST00000537647 935 ntTSL 2 BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 CICP14-201ENST00000629111 2732 ntBASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 FAS-202ENST00000352159 1722 ntTSL 5 BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 BANP-201ENST00000286122 2368 ntTSL 5 BASIC18.73■□□□□ 0.59
CHMP4AQ9BY43 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 ST13P19-201ENST00000442505 1124 ntBASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 REEP1-202ENST00000453231 940 ntTSL 2 BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 AC003686.1-201ENST00000550956 1034 ntBASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 AC091544.8-201ENST00000619490 361 ntBASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 AL591471.1-201ENST00000621855 229 ntBASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 AL157791.1-201ENST00000553667 1699 ntBASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC18.72■□□□□ 0.59
CHMP4AQ9BY43 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 MIR3188-201ENST00000583494 85 ntBASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 AC006504.5-208ENST00000588784 2401 ntBASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 AC067750.1-201ENST00000608826 6545 ntBASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC18.71■□□□□ 0.59
CHMP4AQ9BY43 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CHMP4AQ9BY43 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CHMP4AQ9BY43 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms