Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-CQ95604 AC068587.6-202ENST00000641839 5619 ntBASIC14.97□□□□□ -0.01
HLA-CQ95604 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-CQ95604 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
HLA-CQ95604 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-CQ95604 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC14.97□□□□□ -0.01
HLA-CQ95604 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-CQ95604 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
HLA-CQ95604 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC14.97□□□□□ -0.01
HLA-CQ95604 CDCA4P4-201ENST00000435216 680 ntBASIC14.97□□□□□ -0.01
HLA-CQ95604 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC14.97□□□□□ -0.01
HLA-CQ95604 GOLGA6L16P-201ENST00000441780 1299 ntBASIC14.97□□□□□ -0.01
HLA-CQ95604 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC14.97□□□□□ -0.01
HLA-CQ95604 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-CQ95604 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-CQ95604 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC14.97□□□□□ -0.01
HLA-CQ95604 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC14.97□□□□□ -0.01
HLA-CQ95604 HNRNPA1P56-201ENST00000505767 954 ntBASIC14.97□□□□□ -0.01
HLA-CQ95604 NAA40-205ENST00000539656 577 ntTSL 4 BASIC14.97□□□□□ -0.01
HLA-CQ95604 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC14.97□□□□□ -0.01
HLA-CQ95604 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC14.97□□□□□ -0.01
HLA-CQ95604 SRP14-208ENST00000560773 468 ntTSL 3 BASIC14.97□□□□□ -0.01
HLA-CQ95604 AC005777.1-201ENST00000588332 187 ntBASIC14.97□□□□□ -0.01
HLA-CQ95604 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC14.97□□□□□ -0.01
HLA-CQ95604 NEK4P3-201ENST00000604859 544 ntBASIC14.97□□□□□ -0.01
HLA-CQ95604 AC080013.5-201ENST00000607044 679 ntBASIC14.97□□□□□ -0.01
HLA-CQ95604 COQ4-204ENST00000608951 781 ntTSL 2 BASIC14.97□□□□□ -0.01
HLA-CQ95604 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-CQ95604 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-CQ95604 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC14.97□□□□□ -0.01
HLA-CQ95604 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-CQ95604 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-CQ95604 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-CQ95604 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC14.97□□□□□ -0.01
HLA-CQ95604 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-CQ95604 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-CQ95604 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-CQ95604 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
HLA-CQ95604 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-CQ95604 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
HLA-CQ95604 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.97□□□□□ -0.01
HLA-CQ95604 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HLA-CQ95604 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-CQ95604 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.96□□□□□ -0.01
HLA-CQ95604 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
HLA-CQ95604 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC14.96□□□□□ -0.01
HLA-CQ95604 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-CQ95604 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-CQ95604 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
HLA-CQ95604 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
HLA-CQ95604 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-CQ95604 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-CQ95604 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-CQ95604 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
HLA-CQ95604 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-CQ95604 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-CQ95604 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC14.96□□□□□ -0.01
HLA-CQ95604 C20orf85-201ENST00000371168 803 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-CQ95604 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC14.96□□□□□ -0.01
HLA-CQ95604 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-CQ95604 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
HLA-CQ95604 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC14.96□□□□□ -0.01
HLA-CQ95604 AC006987.1-201ENST00000413610 527 ntBASIC14.96□□□□□ -0.01
HLA-CQ95604 AC010422.1-201ENST00000414548 543 ntTSL 2 BASIC14.96□□□□□ -0.01
HLA-CQ95604 PGAM1P11-201ENST00000416729 680 ntBASIC14.96□□□□□ -0.01
HLA-CQ95604 MAGEA7P-201ENST00000436482 942 ntBASIC14.96□□□□□ -0.01
HLA-CQ95604 AC092473.1-201ENST00000441098 221 ntBASIC14.96□□□□□ -0.01
HLA-CQ95604 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC14.96□□□□□ -0.01
HLA-CQ95604 RHOQP2-201ENST00000449922 579 ntBASIC14.96□□□□□ -0.01
HLA-CQ95604 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC14.96□□□□□ -0.01
HLA-CQ95604 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-CQ95604 RPS18P9-201ENST00000482817 460 ntBASIC14.96□□□□□ -0.01
HLA-CQ95604 SEPHS2P1-201ENST00000511618 1162 ntBASIC14.96□□□□□ -0.01
HLA-CQ95604 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC14.96□□□□□ -0.01
HLA-CQ95604 MIR2278-201ENST00000516344 96 ntBASIC14.96□□□□□ -0.01
HLA-CQ95604 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC14.96□□□□□ -0.01
HLA-CQ95604 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC14.96□□□□□ -0.01
HLA-CQ95604 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC14.96□□□□□ -0.01
HLA-CQ95604 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC14.96□□□□□ -0.01
HLA-CQ95604 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC14.96□□□□□ -0.01
HLA-CQ95604 PRORSD1P-202ENST00000563365 2154 ntBASIC14.96□□□□□ -0.01
HLA-CQ95604 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC14.96□□□□□ -0.01
HLA-CQ95604 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC14.96□□□□□ -0.01
HLA-CQ95604 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC14.96□□□□□ -0.01
HLA-CQ95604 AL021707.6-201ENST00000609212 491 ntBASIC14.96□□□□□ -0.01
HLA-CQ95604 AC020904.3-201ENST00000624199 442 ntBASIC14.96□□□□□ -0.01
HLA-CQ95604 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-CQ95604 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
HLA-CQ95604 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
HLA-CQ95604 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.96□□□□□ -0.01
HLA-CQ95604 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-CQ95604 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-CQ95604 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HLA-CQ95604 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HLA-CQ95604 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.96□□□□□ -0.02
HLA-CQ95604 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
HLA-CQ95604 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-CQ95604 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC14.95□□□□□ -0.02
HLA-CQ95604 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HLA-CQ95604 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms