Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 TPT1P11-201ENST00000458482 498 ntBASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 GCOM2-201ENST00000509133 1104 ntBASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 AP006547.1-201ENST00000563435 692 ntBASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 AC008825.2-201ENST00000603374 718 ntBASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NUP54Q7Z3B4 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 MRPL37P1-201ENST00000592451 1337 ntBASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 AC126335.2-201ENST00000623362 4637 ntBASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 AC005089.1-201ENST00000619486 2241 ntBASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 AC079178.1-201ENST00000420915 656 ntBASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 AC244157.2-201ENST00000616239 1006 ntBASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 INTS4P1-203ENST00000641008 3683 ntBASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NUP54Q7Z3B4 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
NUP54Q7Z3B4 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
NUP54Q7Z3B4 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NUP54Q7Z3B4 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
NUP54Q7Z3B4 TUBB1P2-201ENST00000422712 1306 ntBASIC13.66□□□□□ -0.22
NUP54Q7Z3B4 TUBB1P1-201ENST00000503144 1300 ntBASIC13.66□□□□□ -0.22
NUP54Q7Z3B4 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NUP54Q7Z3B4 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NUP54Q7Z3B4 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
NUP54Q7Z3B4 AC018529.2-202ENST00000611482 3087 ntBASIC13.66□□□□□ -0.22
NUP54Q7Z3B4 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NUP54Q7Z3B4 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NUP54Q7Z3B4 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
NUP54Q7Z3B4 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms