Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 OS9-204ENST00000389146 2091 ntTSL 2 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 AC093525.8-201ENST00000624099 1342 ntBASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 TP73-211ENST00000604074 4806 ntTSL 5 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 LINC01230-201ENST00000625222 3017 ntBASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 GGCT-203ENST00000409144 836 ntTSL 2 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 BTBD6P1-201ENST00000412176 1267 ntBASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 MEP1AP4-201ENST00000423244 1087 ntBASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 MIR4722-201ENST00000578292 60 ntBASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 UBL5-208ENST00000593087 320 ntTSL 3 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 TLL2-201ENST00000357947 6756 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 USP35-204ENST00000530267 2419 ntTSL 2 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 AC113367.3-201ENST00000508316 1912 ntBASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 DEK-201ENST00000244776 1441 ntTSL 2 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC12.37□□□□□ -0.43
PDLIM3Q53GG5 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 AC018442.1-201ENST00000421439 2061 ntBASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 AC007787.1-201ENST00000588095 1583 ntBASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 AGER-203ENST00000375065 665 ntTSL 2 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 AC099336.1-201ENST00000417053 1171 ntBASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 HINT2P1-201ENST00000419438 481 ntBASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 AC123567.1-201ENST00000548294 1261 ntBASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 HCG18-245ENST00000602550 559 ntTSL 4 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 RN7SL828P-201ENST00000607615 303 ntBASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms