Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC10.19□□□□□ -0.78
PRKDCP78527 RN7SL487P-201ENST00000468140 344 ntBASIC10.19□□□□□ -0.78
PRKDCP78527 GOLGA2P10-201ENST00000550961 817 ntBASIC10.19□□□□□ -0.78
PRKDCP78527 SKA2-205ENST00000580541 689 ntTSL 3 BASIC10.19□□□□□ -0.78
PRKDCP78527 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC10.19□□□□□ -0.78
PRKDCP78527 SNX20-205ENST00000610485 557 ntTSL 5 BASIC10.19□□□□□ -0.78
PRKDCP78527 STRN-202ENST00000379213 2254 ntTSL 5 BASIC10.19□□□□□ -0.78
PRKDCP78527 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC10.19□□□□□ -0.78
PRKDCP78527 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 KIR2DL4-203ENST00000357494 1396 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 AC012158.1-201ENST00000535684 1366 ntTSL 2 BASIC10.19□□□□□ -0.78
PRKDCP78527 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC10.18□□□□□ -0.78
PRKDCP78527 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
PRKDCP78527 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 AC138392.1-201ENST00000427577 921 ntBASIC10.18□□□□□ -0.78
PRKDCP78527 CDIPT-AS1-203ENST00000638164 713 ntBASIC10.18□□□□□ -0.78
PRKDCP78527 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC10.18□□□□□ -0.78
PRKDCP78527 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
PRKDCP78527 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC10.18□□□□□ -0.78
PRKDCP78527 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC10.18□□□□□ -0.78
PRKDCP78527 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC10.18□□□□□ -0.78
PRKDCP78527 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 IGFL4-201ENST00000377697 573 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 BTF3-202ENST00000380591 1237 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 AC079742.1-201ENST00000434951 357 ntTSL 3 BASIC10.18□□□□□ -0.78
PRKDCP78527 Z84721.1-201ENST00000438841 372 ntBASIC10.18□□□□□ -0.78
PRKDCP78527 SMCR2-201ENST00000456090 564 ntTSL 2 BASIC10.18□□□□□ -0.78
PRKDCP78527 PSMB8-AS1-206ENST00000458296 958 ntTSL 3 BASIC10.18□□□□□ -0.78
PRKDCP78527 RN7SL794P-201ENST00000469816 280 ntBASIC10.18□□□□□ -0.78
PRKDCP78527 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC10.18□□□□□ -0.78
PRKDCP78527 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
PRKDCP78527 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC10.18□□□□□ -0.78
PRKDCP78527 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC10.18□□□□□ -0.78
PRKDCP78527 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 SEPT10-208ENST00000437928 1782 ntTSL 5 BASIC10.18□□□□□ -0.78
PRKDCP78527 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
PRKDCP78527 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC10.18□□□□□ -0.78
PRKDCP78527 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 GTF2A1L-201ENST00000403751 1639 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 MUC1-207ENST00000368392 1032 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 MUC1-208ENST00000368393 937 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 ATP5G1P7-201ENST00000444398 400 ntBASIC10.18□□□□□ -0.78
PRKDCP78527 MUC1-213ENST00000462215 1189 ntTSL 2 BASIC10.18□□□□□ -0.78
PRKDCP78527 AC093700.1-201ENST00000503348 717 ntBASIC10.18□□□□□ -0.78
PRKDCP78527 AC009132.1-201ENST00000565194 320 ntBASIC10.18□□□□□ -0.78
PRKDCP78527 MIR7704-201ENST00000610524 59 ntBASIC10.18□□□□□ -0.78
PRKDCP78527 ADORA3-204ENST00000632535 1201 ntTSL 3 BASIC10.18□□□□□ -0.78
PRKDCP78527 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
PRKDCP78527 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC10.18□□□□□ -0.78
PRKDCP78527 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
PRKDCP78527 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC10.18□□□□□ -0.78
PRKDCP78527 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC10.18□□□□□ -0.78
PRKDCP78527 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
PRKDCP78527 CCL19-202ENST00000378800 414 ntTSL 2 BASIC10.18□□□□□ -0.78
PRKDCP78527 ZNF720-211ENST00000539915 837 ntTSL 3 BASIC10.18□□□□□ -0.78
PRKDCP78527 DRG2-220ENST00000583355 891 ntTSL 3 BASIC10.18□□□□□ -0.78
PRKDCP78527 AL137028.2-201ENST00000614601 256 ntBASIC10.18□□□□□ -0.78
PRKDCP78527 MVK-217ENST00000639206 367 ntTSL 5 BASIC10.18□□□□□ -0.78
PRKDCP78527 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 RXRG-201ENST00000359842 2041 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC10.17□□□□□ -0.78
PRKDCP78527 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC10.17□□□□□ -0.78
PRKDCP78527 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC10.17□□□□□ -0.78
PRKDCP78527 MIR1249-201ENST00000408671 66 ntBASIC10.17□□□□□ -0.78
PRKDCP78527 TCEA3-204ENST00000461794 713 ntTSL 3 BASIC10.17□□□□□ -0.78
PRKDCP78527 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC10.17□□□□□ -0.78
PRKDCP78527 NAA60-236ENST00000577013 575 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 ITGB2-AS1-204ENST00000609592 482 ntTSL 5 BASIC10.17□□□□□ -0.78
PRKDCP78527 ACE-203ENST00000413513 2237 ntTSL 2 BASIC10.17□□□□□ -0.78
PRKDCP78527 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC10.17□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms