Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14□□□□□ -0.17
LIM2P55344 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14□□□□□ -0.17
LIM2P55344 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14□□□□□ -0.17
LIM2P55344 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
LIM2P55344 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LIM2P55344 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14□□□□□ -0.17
LIM2P55344 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14□□□□□ -0.17
LIM2P55344 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14□□□□□ -0.17
LIM2P55344 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC14□□□□□ -0.17
LIM2P55344 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14□□□□□ -0.17
LIM2P55344 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14□□□□□ -0.17
LIM2P55344 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
LIM2P55344 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
LIM2P55344 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
LIM2P55344 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LIM2P55344 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14□□□□□ -0.17
LIM2P55344 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14□□□□□ -0.17
LIM2P55344 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LIM2P55344 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
LIM2P55344 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
LIM2P55344 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.99□□□□□ -0.17
LIM2P55344 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
LIM2P55344 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
LIM2P55344 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
LIM2P55344 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
LIM2P55344 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 FAM21FP-201ENST00000426241 1131 ntBASIC13.99□□□□□ -0.17
LIM2P55344 OLR1-203ENST00000432556 950 ntTSL 2 BASIC13.99□□□□□ -0.17
LIM2P55344 HIST2H2BB-201ENST00000449108 381 ntBASIC13.99□□□□□ -0.17
LIM2P55344 TPT1P11-201ENST00000458482 498 ntBASIC13.99□□□□□ -0.17
LIM2P55344 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC13.99□□□□□ -0.17
LIM2P55344 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC13.99□□□□□ -0.17
LIM2P55344 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC13.99□□□□□ -0.17
LIM2P55344 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC13.99□□□□□ -0.17
LIM2P55344 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC13.99□□□□□ -0.17
LIM2P55344 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 AC015688.4-201ENST00000580780 1647 ntBASIC13.99□□□□□ -0.17
LIM2P55344 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
LIM2P55344 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
LIM2P55344 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.99□□□□□ -0.17
LIM2P55344 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC13.99□□□□□ -0.17
LIM2P55344 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
LIM2P55344 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC13.99□□□□□ -0.17
LIM2P55344 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
LIM2P55344 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LIM2P55344 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
LIM2P55344 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
LIM2P55344 AL023775.1-201ENST00000454907 1746 ntBASIC13.98□□□□□ -0.17
LIM2P55344 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13.98□□□□□ -0.17
LIM2P55344 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC13.98□□□□□ -0.17
LIM2P55344 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
LIM2P55344 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
LIM2P55344 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC13.98□□□□□ -0.17
LIM2P55344 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
LIM2P55344 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.98□□□□□ -0.17
LIM2P55344 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.98□□□□□ -0.17
LIM2P55344 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC13.98□□□□□ -0.17
LIM2P55344 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
LIM2P55344 RNA5SP412-201ENST00000516234 123 ntBASIC13.98□□□□□ -0.17
LIM2P55344 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
LIM2P55344 AC103988.2-201ENST00000561804 725 ntBASIC13.98□□□□□ -0.17
LIM2P55344 NAA38-206ENST00000576384 424 ntTSL 2 BASIC13.98□□□□□ -0.17
LIM2P55344 MIR4741-201ENST00000579822 90 ntBASIC13.98□□□□□ -0.17
LIM2P55344 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.98□□□□□ -0.17
LIM2P55344 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LIM2P55344 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.98□□□□□ -0.17
LIM2P55344 AC008825.2-201ENST00000603374 718 ntBASIC13.98□□□□□ -0.17
LIM2P55344 AL136301.1-201ENST00000615830 422 ntBASIC13.98□□□□□ -0.17
LIM2P55344 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC13.98□□□□□ -0.17
LIM2P55344 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
LIM2P55344 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms