Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGCS2P54868 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGCS2P54868 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC16.83■□□□□ 0.28
HMGCS2P54868 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.83■□□□□ 0.28
HMGCS2P54868 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HMGCS2P54868 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
HMGCS2P54868 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGCS2P54868 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.82■□□□□ 0.28
HMGCS2P54868 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC16.82■□□□□ 0.28
HMGCS2P54868 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
HMGCS2P54868 IL9RP3-201ENST00000442856 1674 ntBASIC16.82■□□□□ 0.28
HMGCS2P54868 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC16.82■□□□□ 0.28
HMGCS2P54868 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC16.82■□□□□ 0.28
HMGCS2P54868 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HMGCS2P54868 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC16.82■□□□□ 0.28
HMGCS2P54868 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HMGCS2P54868 AL354861.1-201ENST00000445213 355 ntBASIC16.82■□□□□ 0.28
HMGCS2P54868 LYPLA2P1-203ENST00000447689 696 ntBASIC16.82■□□□□ 0.28
HMGCS2P54868 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC16.82■□□□□ 0.28
HMGCS2P54868 CR383656.3-201ENST00000551315 183 ntBASIC16.82■□□□□ 0.28
HMGCS2P54868 AC027237.1-201ENST00000560942 655 ntBASIC16.82■□□□□ 0.28
HMGCS2P54868 AC005041.3-201ENST00000606287 649 ntBASIC16.82■□□□□ 0.28
HMGCS2P54868 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC16.82■□□□□ 0.28
HMGCS2P54868 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
HMGCS2P54868 AC127024.7-201ENST00000625101 200 ntBASIC16.82■□□□□ 0.28
HMGCS2P54868 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC16.82■□□□□ 0.28
HMGCS2P54868 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGCS2P54868 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGCS2P54868 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGCS2P54868 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGCS2P54868 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGCS2P54868 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGCS2P54868 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGCS2P54868 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGCS2P54868 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGCS2P54868 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGCS2P54868 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGCS2P54868 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
HMGCS2P54868 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGCS2P54868 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
HMGCS2P54868 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.81■□□□□ 0.28
HMGCS2P54868 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 AC090502.4-201ENST00000551714 1386 ntBASIC16.81■□□□□ 0.28
HMGCS2P54868 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HMGCS2P54868 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC16.81■□□□□ 0.28
HMGCS2P54868 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC16.81■□□□□ 0.28
HMGCS2P54868 ALG1L13P-202ENST00000519320 584 ntBASIC16.81■□□□□ 0.28
HMGCS2P54868 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 AP000911.2-201ENST00000534330 502 ntBASIC16.81■□□□□ 0.28
HMGCS2P54868 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC16.81■□□□□ 0.28
HMGCS2P54868 RN7SL470P-201ENST00000583069 259 ntBASIC16.81■□□□□ 0.28
HMGCS2P54868 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC16.81■□□□□ 0.28
HMGCS2P54868 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HMGCS2P54868 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HMGCS2P54868 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
HMGCS2P54868 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HMGCS2P54868 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGCS2P54868 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGCS2P54868 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HMGCS2P54868 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGCS2P54868 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
HMGCS2P54868 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HMGCS2P54868 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HMGCS2P54868 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC16.8■□□□□ 0.28
HMGCS2P54868 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HMGCS2P54868 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC16.8■□□□□ 0.28
HMGCS2P54868 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms