Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC15.64■□□□□ 0.09
LIG3P49916 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LIG3P49916 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.63■□□□□ 0.09
LIG3P49916 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.63■□□□□ 0.09
LIG3P49916 AC073869.1-201ENST00000415574 2762 ntBASIC15.63■□□□□ 0.09
LIG3P49916 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 AL133267.1-201ENST00000398220 340 ntBASIC15.63■□□□□ 0.09
LIG3P49916 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.63■□□□□ 0.09
LIG3P49916 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.63■□□□□ 0.09
LIG3P49916 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15.63■□□□□ 0.09
LIG3P49916 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC15.63■□□□□ 0.09
LIG3P49916 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.63■□□□□ 0.09
LIG3P49916 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.63■□□□□ 0.09
LIG3P49916 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
LIG3P49916 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
LIG3P49916 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
LIG3P49916 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
LIG3P49916 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 BRI3BPP1-201ENST00000594224 787 ntBASIC15.63■□□□□ 0.09
LIG3P49916 AC000095.1-201ENST00000603208 874 ntBASIC15.63■□□□□ 0.09
LIG3P49916 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC15.63■□□□□ 0.09
LIG3P49916 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
LIG3P49916 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC15.63■□□□□ 0.09
LIG3P49916 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
LIG3P49916 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
LIG3P49916 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.62■□□□□ 0.09
LIG3P49916 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
LIG3P49916 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC15.62■□□□□ 0.09
LIG3P49916 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
LIG3P49916 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC15.62■□□□□ 0.09
LIG3P49916 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
LIG3P49916 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
LIG3P49916 AL512384.1-201ENST00000406683 331 ntBASIC15.62■□□□□ 0.09
LIG3P49916 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LIG3P49916 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.62■□□□□ 0.09
LIG3P49916 AL442647.2-201ENST00000429864 857 ntBASIC15.62■□□□□ 0.09
LIG3P49916 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.62■□□□□ 0.09
LIG3P49916 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC15.62■□□□□ 0.09
LIG3P49916 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC15.62■□□□□ 0.09
LIG3P49916 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC15.62■□□□□ 0.09
LIG3P49916 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.62■□□□□ 0.09
LIG3P49916 AC132938.2-201ENST00000579188 680 ntBASIC15.62■□□□□ 0.09
LIG3P49916 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.62■□□□□ 0.09
LIG3P49916 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC15.62■□□□□ 0.09
LIG3P49916 IGHV3-72-202ENST00000621503 303 ntBASIC15.62■□□□□ 0.09
LIG3P49916 AL033527.5-201ENST00000641382 801 ntBASIC15.62■□□□□ 0.09
LIG3P49916 AL591163.1-201ENST00000641757 987 ntBASIC15.62■□□□□ 0.09
LIG3P49916 TNN-202ENST00000621086 4234 ntTSL 5 BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms