Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC12.35□□□□□ -0.43
HOXA1P49639 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC12.35□□□□□ -0.43
HOXA1P49639 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC12.35□□□□□ -0.43
HOXA1P49639 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC12.35□□□□□ -0.43
HOXA1P49639 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC12.35□□□□□ -0.43
HOXA1P49639 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC12.35□□□□□ -0.43
HOXA1P49639 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC12.35□□□□□ -0.43
HOXA1P49639 UBL5-208ENST00000593087 320 ntTSL 3 BASIC12.35□□□□□ -0.43
HOXA1P49639 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC12.35□□□□□ -0.43
HOXA1P49639 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC12.35□□□□□ -0.43
HOXA1P49639 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 MAN2C1-242ENST00000569482 3177 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 CACNA1G-228ENST00000514079 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 DHX58-201ENST00000251642 2617 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC12.35□□□□□ -0.43
HOXA1P49639 TK1-203ENST00000588734 1681 ntTSL 2 BASIC12.35□□□□□ -0.43
HOXA1P49639 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC12.35□□□□□ -0.43
HOXA1P49639 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 REXO1L4P-201ENST00000605109 1937 ntBASIC12.35□□□□□ -0.43
HOXA1P49639 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC12.35□□□□□ -0.43
HOXA1P49639 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HOXA1P49639 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 ZBTB45P1-201ENST00000452761 1456 ntBASIC12.34□□□□□ -0.43
HOXA1P49639 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC12.34□□□□□ -0.43
HOXA1P49639 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 BTNL8-201ENST00000231229 2229 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 SFTPA1-202ENST00000419470 2210 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 ACO2-201ENST00000216254 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC12.34□□□□□ -0.43
HOXA1P49639 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC12.34□□□□□ -0.43
HOXA1P49639 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
HOXA1P49639 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC12.34□□□□□ -0.43
HOXA1P49639 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
HOXA1P49639 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
HOXA1P49639 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC12.34□□□□□ -0.43
HOXA1P49639 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
HOXA1P49639 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
HOXA1P49639 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC12.34□□□□□ -0.43
HOXA1P49639 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
HOXA1P49639 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
HOXA1P49639 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 IMP4-203ENST00000409935 958 ntTSL 5 BASIC12.34□□□□□ -0.43
HOXA1P49639 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC12.34□□□□□ -0.43
HOXA1P49639 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC12.34□□□□□ -0.43
HOXA1P49639 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC12.34□□□□□ -0.43
HOXA1P49639 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC12.34□□□□□ -0.43
HOXA1P49639 AC005829.1-201ENST00000570002 483 ntBASIC12.34□□□□□ -0.43
HOXA1P49639 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC12.34□□□□□ -0.43
HOXA1P49639 AL121894.2-201ENST00000602977 491 ntBASIC12.34□□□□□ -0.43
HOXA1P49639 AL589739.1-201ENST00000607720 493 ntBASIC12.34□□□□□ -0.43
HOXA1P49639 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC12.34□□□□□ -0.43
HOXA1P49639 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
HOXA1P49639 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC12.34□□□□□ -0.43
HOXA1P49639 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
HOXA1P49639 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 ZNF148-206ENST00000485866 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC12.34□□□□□ -0.43
HOXA1P49639 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
HOXA1P49639 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 FRMD1-205ENST00000440994 2857 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
HOXA1P49639 VSTM2A-201ENST00000302287 3401 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXA1P49639 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms