Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
CX3CR1P49238 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC13.03□□□□□ -0.32
CX3CR1P49238 AC022137.2-201ENST00000503482 481 ntBASIC13.03□□□□□ -0.32
CX3CR1P49238 AC190387.1-201ENST00000551683 408 ntBASIC13.03□□□□□ -0.32
CX3CR1P49238 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC13.03□□□□□ -0.32
CX3CR1P49238 AC092364.2-202ENST00000597012 1073 ntBASIC13.03□□□□□ -0.32
CX3CR1P49238 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.03□□□□□ -0.32
CX3CR1P49238 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.03□□□□□ -0.32
CX3CR1P49238 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CR1P49238 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CR1P49238 DMBT1P1-203ENST00000636837 4628 ntBASIC13.03□□□□□ -0.32
CX3CR1P49238 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC13.03□□□□□ -0.32
CX3CR1P49238 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC13.03□□□□□ -0.32
CX3CR1P49238 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC13.03□□□□□ -0.32
CX3CR1P49238 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CR1P49238 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CR1P49238 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
CX3CR1P49238 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CR1P49238 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
CX3CR1P49238 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CR1P49238 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CR1P49238 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
CX3CR1P49238 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CR1P49238 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CR1P49238 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CR1P49238 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
CX3CR1P49238 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CR1P49238 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC13.02□□□□□ -0.32
CX3CR1P49238 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CR1P49238 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CR1P49238 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC13.02□□□□□ -0.32
CX3CR1P49238 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CR1P49238 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CR1P49238 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC13.02□□□□□ -0.32
CX3CR1P49238 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
CX3CR1P49238 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CR1P49238 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CR1P49238 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CR1P49238 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CR1P49238 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CR1P49238 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CR1P49238 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CR1P49238 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.02□□□□□ -0.33
CX3CR1P49238 WDR53-203ENST00000429115 683 ntTSL 2 BASIC13.02□□□□□ -0.33
CX3CR1P49238 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CR1P49238 OARD1-208ENST00000469104 704 ntTSL 2 BASIC13.02□□□□□ -0.33
CX3CR1P49238 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC13.02□□□□□ -0.33
CX3CR1P49238 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC13.02□□□□□ -0.33
CX3CR1P49238 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC13.02□□□□□ -0.33
CX3CR1P49238 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.02□□□□□ -0.33
CX3CR1P49238 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC13.02□□□□□ -0.33
CX3CR1P49238 AC004466.1-201ENST00000599515 1080 ntBASIC13.02□□□□□ -0.33
CX3CR1P49238 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC13.02□□□□□ -0.33
CX3CR1P49238 AL033527.5-201ENST00000641382 801 ntBASIC13.02□□□□□ -0.33
CX3CR1P49238 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
CX3CR1P49238 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC13.02□□□□□ -0.33
CX3CR1P49238 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CR1P49238 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
CX3CR1P49238 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC13.02□□□□□ -0.33
CX3CR1P49238 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
CX3CR1P49238 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
CX3CR1P49238 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CR1P49238 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CR1P49238 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.02□□□□□ -0.33
CX3CR1P49238 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CR1P49238 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC13.02□□□□□ -0.33
CX3CR1P49238 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.02□□□□□ -0.33
CX3CR1P49238 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CR1P49238 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC13.02□□□□□ -0.33
CX3CR1P49238 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CR1P49238 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
CX3CR1P49238 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.01□□□□□ -0.33
CX3CR1P49238 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
CX3CR1P49238 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC13.01□□□□□ -0.33
CX3CR1P49238 APOA1-205ENST00000375329 927 ntTSL 2 BASIC13.01□□□□□ -0.33
CX3CR1P49238 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
CX3CR1P49238 SERF2-209ENST00000409646 559 ntTSL 4 BASIC13.01□□□□□ -0.33
CX3CR1P49238 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC13.01□□□□□ -0.33
CX3CR1P49238 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC13.01□□□□□ -0.33
CX3CR1P49238 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC13.01□□□□□ -0.33
CX3CR1P49238 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC13.01□□□□□ -0.33
CX3CR1P49238 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC13.01□□□□□ -0.33
CX3CR1P49238 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC13.01□□□□□ -0.33
CX3CR1P49238 MIR4745-201ENST00000577608 62 ntBASIC13.01□□□□□ -0.33
CX3CR1P49238 YTHDF3-AS1-201ENST00000603538 718 ntBASIC13.01□□□□□ -0.33
CX3CR1P49238 ABBA01031660.1-201ENST00000635219 756 ntBASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms