Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AL645933.1-201ENST00000440087 609 ntBASIC15.28■□□□□ 0.04
PTPN9P43378 IGHVIII-5-2-201ENST00000522505 261 ntBASIC15.28■□□□□ 0.04
PTPN9P43378 NOP2-220ENST00000545915 630 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN9P43378 RNF41-210ENST00000552244 716 ntTSL 3 BASIC15.28■□□□□ 0.04
PTPN9P43378 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN9P43378 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
PTPN9P43378 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN9P43378 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN9P43378 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
PTPN9P43378 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
PTPN9P43378 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN9P43378 AC015818.8-201ENST00000587907 1519 ntBASIC15.27■□□□□ 0.04
PTPN9P43378 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.04
PTPN9P43378 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC15.27■□□□□ 0.04
PTPN9P43378 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
PTPN9P43378 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN9P43378 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN9P43378 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN9P43378 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN9P43378 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
PTPN9P43378 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN9P43378 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN9P43378 AC012617.1-204ENST00000586340 2305 ntBASIC15.27■□□□□ 0.04
PTPN9P43378 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC15.27■□□□□ 0.04
PTPN9P43378 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN9P43378 GOLGA8VP-201ENST00000559009 1798 ntBASIC15.27■□□□□ 0.04
PTPN9P43378 AC104581.4-201ENST00000623126 3052 ntBASIC15.27■□□□□ 0.04
PTPN9P43378 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN9P43378 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN9P43378 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN9P43378 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN9P43378 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN9P43378 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN9P43378 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN9P43378 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
PTPN9P43378 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC15.27■□□□□ 0.04
PTPN9P43378 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN9P43378 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC15.27■□□□□ 0.04
PTPN9P43378 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC15.27■□□□□ 0.04
PTPN9P43378 WBP2-203ENST00000433525 928 ntTSL 2 BASIC15.27■□□□□ 0.04
PTPN9P43378 AL161932.2-201ENST00000435436 679 ntBASIC15.27■□□□□ 0.04
PTPN9P43378 FAM58BP-201ENST00000439056 645 ntBASIC15.27■□□□□ 0.04
PTPN9P43378 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC15.27■□□□□ 0.04
PTPN9P43378 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN9P43378 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC15.27■□□□□ 0.04
PTPN9P43378 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN9P43378 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC15.27■□□□□ 0.04
PTPN9P43378 AC005586.2-201ENST00000563946 837 ntBASIC15.27■□□□□ 0.04
PTPN9P43378 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC15.27■□□□□ 0.04
PTPN9P43378 AC010328.2-201ENST00000597698 1111 ntBASIC15.27■□□□□ 0.04
PTPN9P43378 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC15.27■□□□□ 0.04
PTPN9P43378 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC15.27■□□□□ 0.04
PTPN9P43378 MIR6720-201ENST00000611664 98 ntBASIC15.27■□□□□ 0.04
PTPN9P43378 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN9P43378 AC244394.1-201ENST00000435000 1665 ntBASIC15.27■□□□□ 0.03
PTPN9P43378 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
PTPN9P43378 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.27■□□□□ 0.03
PTPN9P43378 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN9P43378 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN9P43378 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN9P43378 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN9P43378 TMBIM7P-202ENST00000641474 1516 ntBASIC15.27■□□□□ 0.03
PTPN9P43378 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN9P43378 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN9P43378 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.27■□□□□ 0.03
PTPN9P43378 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN9P43378 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PTPN9P43378 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC15.26■□□□□ 0.03
PTPN9P43378 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
PTPN9P43378 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
PTPN9P43378 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC15.26■□□□□ 0.03
PTPN9P43378 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
PTPN9P43378 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC15.26■□□□□ 0.03
PTPN9P43378 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PTPN9P43378 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC15.26■□□□□ 0.03
PTPN9P43378 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC15.26■□□□□ 0.03
PTPN9P43378 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms