Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC12.88□□□□□ -0.35
COL8A1P27658 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC12.88□□□□□ -0.35
COL8A1P27658 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 MBP-202ENST00000355994 2772 ntTSL 5 BASIC12.87□□□□□ -0.35
COL8A1P27658 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC12.87□□□□□ -0.35
COL8A1P27658 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 AC006058.4-201ENST00000624016 1670 ntBASIC12.87□□□□□ -0.35
COL8A1P27658 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
COL8A1P27658 AC004554.1-201ENST00000422830 1468 ntBASIC12.87□□□□□ -0.35
COL8A1P27658 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC12.87□□□□□ -0.35
COL8A1P27658 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
COL8A1P27658 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 RBM38-204ENST00000371219 760 ntTSL 2 BASIC12.87□□□□□ -0.35
COL8A1P27658 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC12.87□□□□□ -0.35
COL8A1P27658 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
COL8A1P27658 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC12.87□□□□□ -0.35
COL8A1P27658 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
COL8A1P27658 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC12.87□□□□□ -0.35
COL8A1P27658 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC12.87□□□□□ -0.35
COL8A1P27658 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC12.87□□□□□ -0.35
COL8A1P27658 AC023141.7-201ENST00000430646 407 ntBASIC12.87□□□□□ -0.35
COL8A1P27658 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC12.87□□□□□ -0.35
COL8A1P27658 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC12.87□□□□□ -0.35
COL8A1P27658 FTH1P22-201ENST00000456305 520 ntBASIC12.87□□□□□ -0.35
COL8A1P27658 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC12.87□□□□□ -0.35
COL8A1P27658 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC12.87□□□□□ -0.35
COL8A1P27658 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 NEU3-207ENST00000534628 746 ntTSL 2 BASIC12.87□□□□□ -0.35
COL8A1P27658 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
COL8A1P27658 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC12.87□□□□□ -0.35
COL8A1P27658 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
COL8A1P27658 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
COL8A1P27658 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 AC024909.3-201ENST00000611513 2257 ntBASIC12.87□□□□□ -0.35
COL8A1P27658 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL8A1P27658 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL8A1P27658 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC12.86□□□□□ -0.35
COL8A1P27658 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL8A1P27658 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC12.86□□□□□ -0.35
COL8A1P27658 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
COL8A1P27658 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL8A1P27658 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL8A1P27658 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC12.86□□□□□ -0.35
COL8A1P27658 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC12.86□□□□□ -0.35
COL8A1P27658 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL8A1P27658 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
COL8A1P27658 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL8A1P27658 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL8A1P27658 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL8A1P27658 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC12.86□□□□□ -0.35
COL8A1P27658 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL8A1P27658 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC12.86□□□□□ -0.35
COL8A1P27658 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
COL8A1P27658 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL8A1P27658 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
COL8A1P27658 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC12.86□□□□□ -0.35
COL8A1P27658 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC12.86□□□□□ -0.35
COL8A1P27658 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC12.86□□□□□ -0.35
COL8A1P27658 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC12.86□□□□□ -0.35
COL8A1P27658 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC12.86□□□□□ -0.35
COL8A1P27658 ETFRF1-205ENST00000555711 783 ntTSL 3 BASIC12.86□□□□□ -0.35
COL8A1P27658 AC027237.1-201ENST00000560942 655 ntBASIC12.86□□□□□ -0.35
COL8A1P27658 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL8A1P27658 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC12.86□□□□□ -0.35
COL8A1P27658 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC12.86□□□□□ -0.35
COL8A1P27658 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC12.86□□□□□ -0.35
COL8A1P27658 AC108359.1-201ENST00000616451 1211 ntBASIC12.86□□□□□ -0.35
COL8A1P27658 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
COL8A1P27658 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms