Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC15.51■□□□□ 0.07
BDNFP23560 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 AL354702.1-201ENST00000442006 1960 ntBASIC15.51■□□□□ 0.07
BDNFP23560 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
BDNFP23560 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 TUBBP5-203ENST00000508529 1334 ntBASIC15.51■□□□□ 0.07
BDNFP23560 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
BDNFP23560 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
BDNFP23560 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC15.51■□□□□ 0.07
BDNFP23560 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC15.51■□□□□ 0.07
BDNFP23560 OARD1-204ENST00000464633 717 ntTSL 2 BASIC15.51■□□□□ 0.07
BDNFP23560 ADM-202ENST00000524948 584 ntTSL 2 BASIC15.51■□□□□ 0.07
BDNFP23560 NEU3-202ENST00000526068 431 ntTSL 2 BASIC15.51■□□□□ 0.07
BDNFP23560 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC15.51■□□□□ 0.07
BDNFP23560 AL645939.5-201ENST00000606834 243 ntBASIC15.51■□□□□ 0.07
BDNFP23560 AC026740.1-201ENST00000607068 791 ntBASIC15.51■□□□□ 0.07
BDNFP23560 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.51■□□□□ 0.07
BDNFP23560 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
BDNFP23560 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
BDNFP23560 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.51■□□□□ 0.07
BDNFP23560 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.51■□□□□ 0.07
BDNFP23560 AC144522.1-201ENST00000625111 1658 ntBASIC15.51■□□□□ 0.07
BDNFP23560 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
BDNFP23560 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 FAM90A7P-201ENST00000382628 1395 ntBASIC15.5■□□□□ 0.07
BDNFP23560 FAM90A23P-201ENST00000400136 1395 ntBASIC15.5■□□□□ 0.07
BDNFP23560 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.5■□□□□ 0.07
BDNFP23560 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.5■□□□□ 0.07
BDNFP23560 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 AC126755.1-201ENST00000525846 6405 ntBASIC15.5■□□□□ 0.07
BDNFP23560 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 AC007686.3-201ENST00000619017 3487 ntBASIC15.5■□□□□ 0.07
BDNFP23560 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
BDNFP23560 INTS4P1-203ENST00000641008 3683 ntBASIC15.5■□□□□ 0.07
BDNFP23560 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.5■□□□□ 0.07
BDNFP23560 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
BDNFP23560 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 CYP46A4P-201ENST00000414953 267 ntBASIC15.5■□□□□ 0.07
BDNFP23560 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC15.5■□□□□ 0.07
BDNFP23560 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC15.5■□□□□ 0.07
BDNFP23560 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 SPTLC1P5-201ENST00000450718 252 ntBASIC15.5■□□□□ 0.07
BDNFP23560 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 MARK2P5-201ENST00000507649 634 ntBASIC15.5■□□□□ 0.07
BDNFP23560 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC15.5■□□□□ 0.07
BDNFP23560 RBM8B-201ENST00000555532 525 ntBASIC15.5■□□□□ 0.07
BDNFP23560 IGHV3OR16-16-201ENST00000563644 343 ntBASIC15.5■□□□□ 0.07
BDNFP23560 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC15.5■□□□□ 0.07
BDNFP23560 AP000346.4-201ENST00000614827 381 ntBASIC15.5■□□□□ 0.07
BDNFP23560 SNX12-206ENST00000622259 661 ntTSL 5 BASIC15.5■□□□□ 0.07
BDNFP23560 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.5■□□□□ 0.07
BDNFP23560 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC15.5■□□□□ 0.07
BDNFP23560 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
BDNFP23560 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.5■□□□□ 0.07
BDNFP23560 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
BDNFP23560 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
BDNFP23560 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 KHSRPP1-201ENST00000427983 1768 ntBASIC15.49■□□□□ 0.07
BDNFP23560 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC15.49■□□□□ 0.07
BDNFP23560 CICP24-201ENST00000605464 2705 ntBASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms