Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
HMGB1P09429 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGB1P09429 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB1P09429 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
HMGB1P09429 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB1P09429 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC17.38■□□□□ 0.37
HMGB1P09429 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB1P09429 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB1P09429 RBM38-204ENST00000371219 760 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGB1P09429 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGB1P09429 HOMER2P2-201ENST00000451621 847 ntBASIC17.38■□□□□ 0.37
HMGB1P09429 NCK2-206ENST00000522586 490 ntTSL 5 BASIC17.38■□□□□ 0.37
HMGB1P09429 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
HMGB1P09429 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC17.38■□□□□ 0.37
HMGB1P09429 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB1P09429 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGB1P09429 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC17.38■□□□□ 0.37
HMGB1P09429 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC17.38■□□□□ 0.37
HMGB1P09429 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB1P09429 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB1P09429 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
HMGB1P09429 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
HMGB1P09429 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB1P09429 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGB1P09429 AC011498.7-201ENST00000624986 2027 ntBASIC17.38■□□□□ 0.37
HMGB1P09429 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
HMGB1P09429 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGB1P09429 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB1P09429 SHC1P1-201ENST00000425230 1745 ntBASIC17.38■□□□□ 0.37
HMGB1P09429 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC17.38■□□□□ 0.37
HMGB1P09429 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
HMGB1P09429 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB1P09429 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC17.38■□□□□ 0.37
HMGB1P09429 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGB1P09429 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC17.37■□□□□ 0.37
HMGB1P09429 TCAM1P-207ENST00000485295 1537 ntBASIC17.37■□□□□ 0.37
HMGB1P09429 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC17.37■□□□□ 0.37
HMGB1P09429 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
HMGB1P09429 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
HMGB1P09429 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGB1P09429 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC17.37■□□□□ 0.37
HMGB1P09429 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGB1P09429 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC17.37■□□□□ 0.37
HMGB1P09429 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
HMGB1P09429 RAB43P1-201ENST00000561790 589 ntBASIC17.37■□□□□ 0.37
HMGB1P09429 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC17.37■□□□□ 0.37
HMGB1P09429 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
HMGB1P09429 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.37■□□□□ 0.37
HMGB1P09429 AL512343.1-201ENST00000605837 169 ntBASIC17.37■□□□□ 0.37
HMGB1P09429 AL136301.1-201ENST00000615830 422 ntBASIC17.37■□□□□ 0.37
HMGB1P09429 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC17.37■□□□□ 0.37
HMGB1P09429 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGB1P09429 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
HMGB1P09429 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HMGB1P09429 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGB1P09429 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC17.37■□□□□ 0.37
HMGB1P09429 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
HMGB1P09429 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB1P09429 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGB1P09429 AC016397.2-201ENST00000624848 1985 ntBASIC17.37■□□□□ 0.37
HMGB1P09429 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC17.37■□□□□ 0.37
HMGB1P09429 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HMGB1P09429 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB1P09429 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB1P09429 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB1P09429 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
HMGB1P09429 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC17.36■□□□□ 0.37
HMGB1P09429 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC17.36■□□□□ 0.37
HMGB1P09429 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB1P09429 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB1P09429 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB1P09429 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB1P09429 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB1P09429 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
HMGB1P09429 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB1P09429 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC17.36■□□□□ 0.37
HMGB1P09429 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB1P09429 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB1P09429 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
HMGB1P09429 ABR-228ENST00000574437 3196 ntTSL 5 BASIC17.36■□□□□ 0.37
HMGB1P09429 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
HMGB1P09429 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms