Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
COL3A1P02461 SIGLEC18P-201ENST00000602271 909 ntBASIC19.03■□□□□ 0.64
COL3A1P02461 HCG18-245ENST00000602550 559 ntTSL 4 BASIC19.03■□□□□ 0.64
COL3A1P02461 BAP1-211ENST00000615113 489 ntBASIC19.03■□□□□ 0.64
COL3A1P02461 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
COL3A1P02461 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC19.02■□□□□ 0.64
COL3A1P02461 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL3A1P02461 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL3A1P02461 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC19.02■□□□□ 0.64
COL3A1P02461 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL3A1P02461 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
COL3A1P02461 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL3A1P02461 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC19.02■□□□□ 0.64
COL3A1P02461 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC19.02■□□□□ 0.64
COL3A1P02461 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC19.02■□□□□ 0.64
COL3A1P02461 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
COL3A1P02461 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC19.02■□□□□ 0.63
COL3A1P02461 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL3A1P02461 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC19.02■□□□□ 0.63
COL3A1P02461 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL3A1P02461 BAX-205ENST00000391871 687 ntTSL 5 BASIC19.02■□□□□ 0.63
COL3A1P02461 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC19.02■□□□□ 0.63
COL3A1P02461 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC19.02■□□□□ 0.63
COL3A1P02461 AL807761.2-201ENST00000422849 729 ntBASIC19.02■□□□□ 0.63
COL3A1P02461 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
COL3A1P02461 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC19.02■□□□□ 0.63
COL3A1P02461 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
COL3A1P02461 RN7SL181P-201ENST00000462921 277 ntBASIC19.02■□□□□ 0.63
COL3A1P02461 TMEM198B-204ENST00000484016 896 ntBASIC19.02■□□□□ 0.63
COL3A1P02461 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC19.02■□□□□ 0.63
COL3A1P02461 KLF17P1-201ENST00000547105 1126 ntBASIC19.02■□□□□ 0.63
COL3A1P02461 AL512310.5-201ENST00000551999 515 ntBASIC19.02■□□□□ 0.63
COL3A1P02461 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC19.02■□□□□ 0.63
COL3A1P02461 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC19.02■□□□□ 0.63
COL3A1P02461 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL3A1P02461 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
COL3A1P02461 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC19.02■□□□□ 0.63
COL3A1P02461 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC19.02■□□□□ 0.63
COL3A1P02461 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL3A1P02461 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
COL3A1P02461 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC19.01■□□□□ 0.63
COL3A1P02461 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC19.01■□□□□ 0.63
COL3A1P02461 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
COL3A1P02461 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC19.01■□□□□ 0.63
COL3A1P02461 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
COL3A1P02461 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
COL3A1P02461 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL3A1P02461 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL3A1P02461 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC19.01■□□□□ 0.63
COL3A1P02461 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC19.01■□□□□ 0.63
COL3A1P02461 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
COL3A1P02461 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL3A1P02461 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL3A1P02461 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
COL3A1P02461 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
COL3A1P02461 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC19.01■□□□□ 0.63
COL3A1P02461 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC19.01■□□□□ 0.63
COL3A1P02461 AL512306.1-201ENST00000432698 848 ntBASIC19.01■□□□□ 0.63
COL3A1P02461 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC19.01■□□□□ 0.63
COL3A1P02461 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL3A1P02461 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC19.01■□□□□ 0.63
COL3A1P02461 AC005740.1-201ENST00000515639 522 ntBASIC19.01■□□□□ 0.63
COL3A1P02461 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC19.01■□□□□ 0.63
COL3A1P02461 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC19.01■□□□□ 0.63
COL3A1P02461 TMCO5B-205ENST00000530020 894 ntBASIC19.01■□□□□ 0.63
COL3A1P02461 NEU3-205ENST00000531619 582 ntTSL 5 BASIC19.01■□□□□ 0.63
COL3A1P02461 CMC2-204ENST00000562713 573 ntTSL 3 BASIC19.01■□□□□ 0.63
COL3A1P02461 CMC2-209ENST00000565108 399 ntTSL 2 BASIC19.01■□□□□ 0.63
COL3A1P02461 NDUFB10P1-201ENST00000567319 521 ntBASIC19.01■□□□□ 0.63
COL3A1P02461 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL3A1P02461 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL3A1P02461 HLA-DQB1-202ENST00000399079 1501 ntBASIC19.01■□□□□ 0.63
COL3A1P02461 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
COL3A1P02461 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL3A1P02461 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL3A1P02461 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
COL3A1P02461 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL3A1P02461 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
COL3A1P02461 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC19■□□□□ 0.63
COL3A1P02461 KRT8P43-201ENST00000406052 1458 ntBASIC19■□□□□ 0.63
COL3A1P02461 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL3A1P02461 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC19■□□□□ 0.63
COL3A1P02461 AC069218.1-201ENST00000435269 762 ntBASIC19■□□□□ 0.63
COL3A1P02461 KRT18P15-201ENST00000458108 1291 ntBASIC19■□□□□ 0.63
COL3A1P02461 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC19■□□□□ 0.63
COL3A1P02461 NEU3-207ENST00000534628 746 ntTSL 2 BASIC19■□□□□ 0.63
COL3A1P02461 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC19■□□□□ 0.63
COL3A1P02461 FOS-206ENST00000555347 1280 ntTSL 2 BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms