Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CUX2O14529 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
CUX2O14529 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC24.41■■□□□ 1.5
CUX2O14529 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC24.41■■□□□ 1.5
CUX2O14529 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CUX2O14529 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC24.41■■□□□ 1.5
CUX2O14529 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
CUX2O14529 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC24.41■■□□□ 1.5
CUX2O14529 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
CUX2O14529 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CUX2O14529 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC24.41■■□□□ 1.5
CUX2O14529 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC24.4■■□□□ 1.5
CUX2O14529 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC24.4■■□□□ 1.5
CUX2O14529 WARS-232ENST00000556645 2508 ntTSL 5 BASIC24.4■■□□□ 1.5
CUX2O14529 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC24.4■■□□□ 1.5
CUX2O14529 AC023024.2-201ENST00000623561 1993 ntBASIC24.4■■□□□ 1.5
CUX2O14529 HDGF-202ENST00000368206 960 ntTSL 5 BASIC24.4■■□□□ 1.5
CUX2O14529 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CUX2O14529 WDR54-202ENST00000409791 854 ntTSL 3 BASIC24.4■■□□□ 1.5
CUX2O14529 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC24.4■■□□□ 1.5
CUX2O14529 KRT19P4-201ENST00000443208 943 ntBASIC24.4■■□□□ 1.5
CUX2O14529 HNRNPA1P10-201ENST00000444945 962 ntBASIC24.4■■□□□ 1.5
CUX2O14529 KCNE3-202ENST00000525550 935 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CUX2O14529 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC24.4■■□□□ 1.5
CUX2O14529 KRT127P-201ENST00000547183 433 ntBASIC24.4■■□□□ 1.5
CUX2O14529 AC009065.4-201ENST00000563734 543 ntTSL 3 BASIC24.4■■□□□ 1.5
CUX2O14529 AC008764.4-207ENST00000600705 956 ntTSL 2 BASIC24.4■■□□□ 1.5
CUX2O14529 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
CUX2O14529 AC148476.1-201ENST00000622182 705 ntBASIC24.4■■□□□ 1.5
CUX2O14529 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC24.4■■□□□ 1.5
CUX2O14529 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CUX2O14529 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CUX2O14529 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
CUX2O14529 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC24.4■■□□□ 1.5
CUX2O14529 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
CUX2O14529 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC24.4■■□□□ 1.5
CUX2O14529 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
CUX2O14529 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
CUX2O14529 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC24.4■■□□□ 1.5
CUX2O14529 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CUX2O14529 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC24.4■■□□□ 1.5
CUX2O14529 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC24.4■■□□□ 1.5
CUX2O14529 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.5
CUX2O14529 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
CUX2O14529 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CUX2O14529 NALT1-202ENST00000450304 437 ntTSL 3 BASIC24.39■■□□□ 1.5
CUX2O14529 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.5
CUX2O14529 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
CUX2O14529 RN7SL605P-201ENST00000577229 281 ntBASIC24.39■■□□□ 1.5
CUX2O14529 AC091769.1-201ENST00000619576 568 ntBASIC24.39■■□□□ 1.5
CUX2O14529 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC24.39■■□□□ 1.5
CUX2O14529 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
CUX2O14529 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC24.39■■□□□ 1.5
CUX2O14529 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CUX2O14529 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC24.39■■□□□ 1.5
CUX2O14529 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CUX2O14529 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CUX2O14529 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CUX2O14529 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC24.39■■□□□ 1.49
CUX2O14529 PRAL-201ENST00000624952 3286 ntBASIC24.39■■□□□ 1.49
CUX2O14529 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CUX2O14529 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC24.39■■□□□ 1.49
CUX2O14529 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.49
CUX2O14529 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CUX2O14529 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
CUX2O14529 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CUX2O14529 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
CUX2O14529 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CUX2O14529 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CUX2O14529 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC24.38■■□□□ 1.49
CUX2O14529 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC24.38■■□□□ 1.49
CUX2O14529 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CUX2O14529 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC24.38■■□□□ 1.49
CUX2O14529 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CUX2O14529 IGHVIII-5-2-201ENST00000522505 261 ntBASIC24.38■■□□□ 1.49
CUX2O14529 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC24.38■■□□□ 1.49
CUX2O14529 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CUX2O14529 AC126755.5-201ENST00000622756 267 ntBASIC24.38■■□□□ 1.49
CUX2O14529 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
CUX2O14529 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CUX2O14529 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
CUX2O14529 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CUX2O14529 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC24.38■■□□□ 1.49
CUX2O14529 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
CUX2O14529 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CUX2O14529 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CUX2O14529 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CUX2O14529 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
CUX2O14529 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CUX2O14529 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC24.38■■□□□ 1.49
CUX2O14529 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CUX2O14529 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
CUX2O14529 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
CUX2O14529 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC24.38■■□□□ 1.49
CUX2O14529 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
CUX2O14529 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
CUX2O14529 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CUX2O14529 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC24.38■■□□□ 1.49
CUX2O14529 RPSAP12-201ENST00000435879 888 ntBASIC24.38■■□□□ 1.49
CUX2O14529 LINC01833-204ENST00000444871 581 ntTSL 3 BASIC24.38■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms