Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A3BPQ9Y5P4 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.51■□□□□ 0.23
COL4A3BPQ9Y5P4 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
COL4A3BPQ9Y5P4 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
COL4A3BPQ9Y5P4 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A3BPQ9Y5P4 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC16.51■□□□□ 0.23
COL4A3BPQ9Y5P4 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A3BPQ9Y5P4 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC16.51■□□□□ 0.23
COL4A3BPQ9Y5P4 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A3BPQ9Y5P4 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A3BPQ9Y5P4 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
COL4A3BPQ9Y5P4 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 APOA2-204ENST00000464492 530 ntTSL 3 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 NOP2-211ENST00000540228 668 ntTSL 2 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 AL022328.3-201ENST00000607943 679 ntBASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 AL358472.3-201ENST00000608147 415 ntBASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 BX088702.1-201ENST00000610784 235 ntBASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A3BPQ9Y5P4 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 AC097376.2-205ENST00000610159 5334 ntBASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 MIR1247-201ENST00000408206 136 ntBASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 KRTAP10-13P-201ENST00000412914 571 ntBASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 ALG3P1-201ENST00000508806 1114 ntBASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 ZNF767P-206ENST00000513792 565 ntBASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 KLK11-210ENST00000600362 759 ntTSL 3 BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 AC244093.1-201ENST00000610837 814 ntBASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A3BPQ9Y5P4 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms