Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AC026954.1-201ENST00000429771 1293 ntBASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 CNN2P10-201ENST00000443067 918 ntBASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 ACA64.2-201ENST00000459014 129 ntBASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 PPY2P-201ENST00000582808 702 ntBASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 AL358472.3-201ENST00000608147 415 ntBASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 KHSRPP1-201ENST00000427983 1768 ntBASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
AP4E1Q9UPM8 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 AC067750.1-201ENST00000608826 6545 ntBASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 LINC01230-201ENST00000625222 3017 ntBASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 MIR1909-201ENST00000411312 80 ntBASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 AC104989.1-201ENST00000519711 778 ntBASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 AC079316.1-201ENST00000548397 411 ntBASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 AP006547.1-201ENST00000563435 692 ntBASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
AP4E1Q9UPM8 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 AC215219.1-201ENST00000400706 1817 ntBASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 TKT-201ENST00000296289 1931 ntTSL 5 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms