Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 RNU1-114P-201ENST00000365297 166 ntBASIC14.25□□□□□ -0.13
VMP1Q96GC9 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 AC079776.1-201ENST00000401540 1152 ntBASIC14.25□□□□□ -0.13
VMP1Q96GC9 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 GHSR-202ENST00000427970 912 ntBASIC14.25□□□□□ -0.13
VMP1Q96GC9 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 BCRP2-202ENST00000447763 634 ntBASIC14.25□□□□□ -0.13
VMP1Q96GC9 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 ACA64.2-201ENST00000459014 129 ntBASIC14.25□□□□□ -0.13
VMP1Q96GC9 BCRP6-201ENST00000510112 632 ntBASIC14.25□□□□□ -0.13
VMP1Q96GC9 BCRP7-201ENST00000511549 544 ntBASIC14.25□□□□□ -0.13
VMP1Q96GC9 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 HILS1-202ENST00000545329 423 ntBASIC14.25□□□□□ -0.13
VMP1Q96GC9 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 PRSS30P-206ENST00000641773 873 ntBASIC14.25□□□□□ -0.13
VMP1Q96GC9 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 MSTO2P-201ENST00000314835 1709 ntBASIC14.24□□□□□ -0.13
VMP1Q96GC9 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 AL356585.2-201ENST00000625078 2396 ntBASIC14.24□□□□□ -0.13
VMP1Q96GC9 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 AL158070.2-201ENST00000623713 1621 ntBASIC14.24□□□□□ -0.13
VMP1Q96GC9 USP3-204ENST00000540797 5474 ntTSL 2 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 KLF2P2-201ENST00000416807 1039 ntBASIC14.24□□□□□ -0.13
VMP1Q96GC9 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 IGHV3-71-201ENST00000523324 359 ntBASIC14.24□□□□□ -0.13
VMP1Q96GC9 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 AC017083.2-201ENST00000608069 979 ntBASIC14.24□□□□□ -0.13
VMP1Q96GC9 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 GALC-206ENST00000544807 2528 ntTSL 2 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 PEG13-201ENST00000631594 5667 ntBASIC14.24□□□□□ -0.13
VMP1Q96GC9 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC14.24□□□□□ -0.13
VMP1Q96GC9 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
VMP1Q96GC9 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms