Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
USP39Q53GS9 UFM1-202ENST00000379649 846 ntTSL 4 BASIC15.03■□□□□ -0
USP39Q53GS9 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC15.03■□□□□ -0
USP39Q53GS9 RN7SKP175-201ENST00000408472 289 ntBASIC15.03■□□□□ -0
USP39Q53GS9 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC15.03■□□□□ -0
USP39Q53GS9 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC15.03■□□□□ -0
USP39Q53GS9 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC15.03■□□□□ -0
USP39Q53GS9 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
USP39Q53GS9 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC15.03■□□□□ -0
USP39Q53GS9 AC009955.4-201ENST00000597192 544 ntBASIC15.03■□□□□ -0
USP39Q53GS9 PCBP2-OT1-201ENST00000634357 590 ntBASIC15.03■□□□□ -0
USP39Q53GS9 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
USP39Q53GS9 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.03■□□□□ -0
USP39Q53GS9 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.03■□□□□ -0
USP39Q53GS9 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.03■□□□□ -0
USP39Q53GS9 LINC01101-201ENST00000622953 1884 ntBASIC15.03■□□□□ -0
USP39Q53GS9 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
USP39Q53GS9 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
USP39Q53GS9 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.03■□□□□ -0
USP39Q53GS9 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
USP39Q53GS9 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.03■□□□□ -0
USP39Q53GS9 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC15.03■□□□□ -0
USP39Q53GS9 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC15.03■□□□□ -0
USP39Q53GS9 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
USP39Q53GS9 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.03■□□□□ -0
USP39Q53GS9 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.02■□□□□ -0
USP39Q53GS9 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USP39Q53GS9 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
USP39Q53GS9 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USP39Q53GS9 LINC00528-201ENST00000600723 2160 ntBASIC15.02■□□□□ -0
USP39Q53GS9 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USP39Q53GS9 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USP39Q53GS9 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.02■□□□□ -0
USP39Q53GS9 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
USP39Q53GS9 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
USP39Q53GS9 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.02■□□□□ -0
USP39Q53GS9 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.02■□□□□ -0
USP39Q53GS9 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
USP39Q53GS9 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USP39Q53GS9 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.02■□□□□ -0
USP39Q53GS9 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC15.02■□□□□ -0
USP39Q53GS9 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
USP39Q53GS9 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USP39Q53GS9 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USP39Q53GS9 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC15.02■□□□□ -0
USP39Q53GS9 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
USP39Q53GS9 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC15.02■□□□□ -0
USP39Q53GS9 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.02■□□□□ -0
USP39Q53GS9 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC15.02■□□□□ -0
USP39Q53GS9 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC15.02■□□□□ -0
USP39Q53GS9 HNRNPA1P41-201ENST00000397777 928 ntBASIC15.02■□□□□ -0
USP39Q53GS9 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.02■□□□□ -0
USP39Q53GS9 RPL18P13-201ENST00000478088 569 ntBASIC15.02■□□□□ -0
USP39Q53GS9 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC15.02■□□□□ -0
USP39Q53GS9 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC15.02■□□□□ -0
USP39Q53GS9 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC15.02■□□□□ -0
USP39Q53GS9 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC15.02■□□□□ -0
USP39Q53GS9 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC15.02■□□□□ -0
USP39Q53GS9 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC15.02■□□□□ -0
USP39Q53GS9 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC15.02■□□□□ -0
USP39Q53GS9 AC012044.1-201ENST00000603431 297 ntBASIC15.02■□□□□ -0
USP39Q53GS9 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC15.02■□□□□ -0
USP39Q53GS9 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
USP39Q53GS9 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.02□□□□□ -0.01
USP39Q53GS9 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
USP39Q53GS9 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
USP39Q53GS9 PCDHA3-202ENST00000532566 4594 ntBASIC15.02□□□□□ -0.01
USP39Q53GS9 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
USP39Q53GS9 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
USP39Q53GS9 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
USP39Q53GS9 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
USP39Q53GS9 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
USP39Q53GS9 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.02□□□□□ -0.01
USP39Q53GS9 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
USP39Q53GS9 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
USP39Q53GS9 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.02□□□□□ -0.01
USP39Q53GS9 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.02□□□□□ -0.01
USP39Q53GS9 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
USP39Q53GS9 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
USP39Q53GS9 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
USP39Q53GS9 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
USP39Q53GS9 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
USP39Q53GS9 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
USP39Q53GS9 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC15.02□□□□□ -0.01
USP39Q53GS9 CICP23-201ENST00000605013 2741 ntBASIC15.01□□□□□ -0.01
USP39Q53GS9 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
USP39Q53GS9 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
USP39Q53GS9 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
USP39Q53GS9 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
USP39Q53GS9 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
USP39Q53GS9 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
USP39Q53GS9 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
USP39Q53GS9 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
USP39Q53GS9 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
USP39Q53GS9 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.01□□□□□ -0.01
USP39Q53GS9 AL360270.3-201ENST00000609118 1348 ntBASIC15.01□□□□□ -0.01
USP39Q53GS9 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
USP39Q53GS9 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
USP39Q53GS9 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
USP39Q53GS9 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms