Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
SCN1BQ07699 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
SCN1BQ07699 AC007967.4-201ENST00000614700 386 ntBASIC13.26□□□□□ -0.29
SCN1BQ07699 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC13.26□□□□□ -0.29
SCN1BQ07699 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC13.26□□□□□ -0.29
SCN1BQ07699 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
SCN1BQ07699 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC13.26□□□□□ -0.29
SCN1BQ07699 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
SCN1BQ07699 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
SCN1BQ07699 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
SCN1BQ07699 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC13.25□□□□□ -0.29
SCN1BQ07699 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC13.25□□□□□ -0.29
SCN1BQ07699 MIR193BHG-211ENST00000641433 5365 ntBASIC13.25□□□□□ -0.29
SCN1BQ07699 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
SCN1BQ07699 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
SCN1BQ07699 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
SCN1BQ07699 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
SCN1BQ07699 FO393414.2-201ENST00000405153 598 ntBASIC13.25□□□□□ -0.29
SCN1BQ07699 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC13.25□□□□□ -0.29
SCN1BQ07699 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC13.25□□□□□ -0.29
SCN1BQ07699 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC13.25□□□□□ -0.29
SCN1BQ07699 DAD1-205ENST00000543337 501 ntTSL 3 BASIC13.25□□□□□ -0.29
SCN1BQ07699 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC13.25□□□□□ -0.29
SCN1BQ07699 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC13.25□□□□□ -0.29
SCN1BQ07699 PRR29-209ENST00000582540 967 ntTSL 2 BASIC13.25□□□□□ -0.29
SCN1BQ07699 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
SCN1BQ07699 AC134684.3-201ENST00000641758 218 ntBASIC13.25□□□□□ -0.29
SCN1BQ07699 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 OS9-206ENST00000435406 2346 ntTSL 2 BASIC13.25□□□□□ -0.29
SCN1BQ07699 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC13.25□□□□□ -0.29
SCN1BQ07699 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
SCN1BQ07699 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.25□□□□□ -0.29
SCN1BQ07699 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
SCN1BQ07699 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC13.25□□□□□ -0.29
SCN1BQ07699 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SCN1BQ07699 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
SCN1BQ07699 MEX3B-202ENST00000558133 4333 ntBASIC13.25□□□□□ -0.29
SCN1BQ07699 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC13.24□□□□□ -0.29
SCN1BQ07699 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC13.24□□□□□ -0.29
SCN1BQ07699 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
SCN1BQ07699 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
SCN1BQ07699 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC13.24□□□□□ -0.29
SCN1BQ07699 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC13.24□□□□□ -0.29
SCN1BQ07699 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 CETN4P-206ENST00000642099 2168 ntBASIC13.24□□□□□ -0.29
SCN1BQ07699 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC13.24□□□□□ -0.29
SCN1BQ07699 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
SCN1BQ07699 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
SCN1BQ07699 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 GOLGA6L17P-202ENST00000614358 1398 ntBASIC13.24□□□□□ -0.29
SCN1BQ07699 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC13.24□□□□□ -0.29
SCN1BQ07699 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC13.24□□□□□ -0.29
SCN1BQ07699 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 AC254562.1-201ENST00000417586 456 ntBASIC13.24□□□□□ -0.29
SCN1BQ07699 AC136604.1-201ENST00000418535 575 ntBASIC13.24□□□□□ -0.29
SCN1BQ07699 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC13.24□□□□□ -0.29
SCN1BQ07699 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC13.24□□□□□ -0.29
SCN1BQ07699 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SCN1BQ07699 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
SCN1BQ07699 CALM1-205ENST00000553542 877 ntTSL 5 BASIC13.24□□□□□ -0.29
SCN1BQ07699 AL079307.3-201ENST00000556114 283 ntBASIC13.24□□□□□ -0.29
SCN1BQ07699 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
SCN1BQ07699 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
SCN1BQ07699 AL133215.2-201ENST00000609242 977 ntBASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms