Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.53□□□□□ -0.08
LIMK1P53667 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.53□□□□□ -0.08
LIMK1P53667 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.53□□□□□ -0.08
LIMK1P53667 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.53□□□□□ -0.08
LIMK1P53667 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.53□□□□□ -0.08
LIMK1P53667 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
LIMK1P53667 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
LIMK1P53667 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 AL583805.1-201ENST00000391389 531 ntBASIC14.53□□□□□ -0.08
LIMK1P53667 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC14.53□□□□□ -0.08
LIMK1P53667 KLF2P1-201ENST00000447438 1042 ntBASIC14.53□□□□□ -0.08
LIMK1P53667 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC14.53□□□□□ -0.08
LIMK1P53667 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC14.53□□□□□ -0.08
LIMK1P53667 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
LIMK1P53667 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC14.53□□□□□ -0.08
LIMK1P53667 SIGLEC18P-201ENST00000602271 909 ntBASIC14.53□□□□□ -0.08
LIMK1P53667 AC138696.2-201ENST00000607376 223 ntBASIC14.53□□□□□ -0.08
LIMK1P53667 AC018695.6-201ENST00000614011 534 ntBASIC14.53□□□□□ -0.08
LIMK1P53667 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
LIMK1P53667 AC073911.3-201ENST00000624401 631 ntBASIC14.53□□□□□ -0.08
LIMK1P53667 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
LIMK1P53667 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
LIMK1P53667 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
LIMK1P53667 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.53□□□□□ -0.08
LIMK1P53667 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
LIMK1P53667 AC092127.1-201ENST00000567093 3455 ntBASIC14.53□□□□□ -0.08
LIMK1P53667 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LIMK1P53667 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.53□□□□□ -0.08
LIMK1P53667 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC14.53□□□□□ -0.08
LIMK1P53667 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC14.52□□□□□ -0.08
LIMK1P53667 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.52□□□□□ -0.08
LIMK1P53667 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
LIMK1P53667 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LIMK1P53667 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LIMK1P53667 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LIMK1P53667 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LIMK1P53667 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LIMK1P53667 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LIMK1P53667 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LIMK1P53667 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LIMK1P53667 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.52□□□□□ -0.08
LIMK1P53667 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LIMK1P53667 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LIMK1P53667 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.52□□□□□ -0.08
LIMK1P53667 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC14.52□□□□□ -0.08
LIMK1P53667 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
LIMK1P53667 KRT18P9-201ENST00000604826 1300 ntBASIC14.52□□□□□ -0.08
LIMK1P53667 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
LIMK1P53667 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LIMK1P53667 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LIMK1P53667 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC14.52□□□□□ -0.09
LIMK1P53667 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LIMK1P53667 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC14.52□□□□□ -0.09
LIMK1P53667 HLA-K-203ENST00000430151 1046 ntBASIC14.52□□□□□ -0.09
LIMK1P53667 DUTP3-201ENST00000450025 415 ntBASIC14.52□□□□□ -0.09
LIMK1P53667 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC14.52□□□□□ -0.09
LIMK1P53667 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
LIMK1P53667 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC14.52□□□□□ -0.09
LIMK1P53667 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LIMK1P53667 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC14.52□□□□□ -0.09
LIMK1P53667 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
LIMK1P53667 AL118516.1-201ENST00000564152 670 ntBASIC14.52□□□□□ -0.09
LIMK1P53667 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC14.52□□□□□ -0.09
LIMK1P53667 AC025262.2-201ENST00000623975 1056 ntBASIC14.52□□□□□ -0.09
LIMK1P53667 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC14.52□□□□□ -0.09
LIMK1P53667 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LIMK1P53667 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
LIMK1P53667 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LIMK1P53667 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LIMK1P53667 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.52□□□□□ -0.09
LIMK1P53667 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LIMK1P53667 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.52□□□□□ -0.09
LIMK1P53667 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
LIMK1P53667 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LIMK1P53667 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.52□□□□□ -0.09
LIMK1P53667 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LIMK1P53667 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.52□□□□□ -0.09
LIMK1P53667 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LIMK1P53667 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LIMK1P53667 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LIMK1P53667 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms