Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
RFC3P40938 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
RFC3P40938 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.23
RFC3P40938 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC13.58□□□□□ -0.23
RFC3P40938 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.58□□□□□ -0.23
RFC3P40938 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.58□□□□□ -0.23
RFC3P40938 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.23
RFC3P40938 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
RFC3P40938 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.58□□□□□ -0.23
RFC3P40938 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
RFC3P40938 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
RFC3P40938 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
RFC3P40938 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
RFC3P40938 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
RFC3P40938 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.58□□□□□ -0.24
RFC3P40938 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC13.58□□□□□ -0.24
RFC3P40938 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC13.58□□□□□ -0.24
RFC3P40938 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
RFC3P40938 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 RN7SKP230-201ENST00000365642 335 ntBASIC13.58□□□□□ -0.24
RFC3P40938 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
RFC3P40938 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC13.58□□□□□ -0.24
RFC3P40938 SMS-201ENST00000379404 1174 ntTSL 3 BASIC13.58□□□□□ -0.24
RFC3P40938 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC13.58□□□□□ -0.24
RFC3P40938 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC13.58□□□□□ -0.24
RFC3P40938 EIF4HP1-201ENST00000453115 687 ntBASIC13.58□□□□□ -0.24
RFC3P40938 ATP6V0CP2-201ENST00000469409 207 ntBASIC13.58□□□□□ -0.24
RFC3P40938 SERPINA13P-202ENST00000478994 924 ntBASIC13.58□□□□□ -0.24
RFC3P40938 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC13.58□□□□□ -0.24
RFC3P40938 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC13.58□□□□□ -0.24
RFC3P40938 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC13.58□□□□□ -0.24
RFC3P40938 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
RFC3P40938 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC13.58□□□□□ -0.24
RFC3P40938 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
RFC3P40938 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC13.58□□□□□ -0.24
RFC3P40938 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.58□□□□□ -0.24
RFC3P40938 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
RFC3P40938 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
RFC3P40938 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 MROH4P-201ENST00000431302 1578 ntBASIC13.58□□□□□ -0.24
RFC3P40938 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.58□□□□□ -0.24
RFC3P40938 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
RFC3P40938 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.57□□□□□ -0.24
RFC3P40938 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
RFC3P40938 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
RFC3P40938 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RFC3P40938 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.57□□□□□ -0.24
RFC3P40938 AC005840.4-201ENST00000541242 2494 ntBASIC13.57□□□□□ -0.24
RFC3P40938 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RFC3P40938 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RFC3P40938 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RFC3P40938 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.57□□□□□ -0.24
RFC3P40938 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC13.57□□□□□ -0.24
RFC3P40938 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RFC3P40938 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
RFC3P40938 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC13.57□□□□□ -0.24
RFC3P40938 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC13.57□□□□□ -0.24
RFC3P40938 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RFC3P40938 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
RFC3P40938 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RFC3P40938 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC13.57□□□□□ -0.24
RFC3P40938 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RFC3P40938 AC138028.6-201ENST00000616106 1482 ntBASIC13.57□□□□□ -0.24
RFC3P40938 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RFC3P40938 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
RFC3P40938 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RFC3P40938 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC13.57□□□□□ -0.24
RFC3P40938 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC13.57□□□□□ -0.24
RFC3P40938 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC13.57□□□□□ -0.24
RFC3P40938 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
RFC3P40938 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RFC3P40938 SLC25A24P2-201ENST00000415059 510 ntBASIC13.57□□□□□ -0.24
RFC3P40938 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC13.57□□□□□ -0.24
RFC3P40938 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
RFC3P40938 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
RFC3P40938 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC13.57□□□□□ -0.24
RFC3P40938 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
RFC3P40938 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC13.57□□□□□ -0.24
RFC3P40938 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC13.57□□□□□ -0.24
RFC3P40938 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms