Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ALG3P1-201ENST00000508806 1114 ntBASIC14.07□□□□□ -0.16
SDC1P18827 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.07□□□□□ -0.16
SDC1P18827 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.07□□□□□ -0.16
SDC1P18827 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.07□□□□□ -0.16
SDC1P18827 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.07□□□□□ -0.16
SDC1P18827 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.07□□□□□ -0.16
SDC1P18827 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.07□□□□□ -0.16
SDC1P18827 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
SDC1P18827 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
SDC1P18827 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14.07□□□□□ -0.16
SDC1P18827 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
SDC1P18827 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.07□□□□□ -0.16
SDC1P18827 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
SDC1P18827 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.07□□□□□ -0.16
SDC1P18827 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
SDC1P18827 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 AP000593.2-201ENST00000542775 1433 ntBASIC14.07□□□□□ -0.16
SDC1P18827 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SDC1P18827 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SDC1P18827 SBF1P1-201ENST00000444527 5631 ntBASIC14.06□□□□□ -0.16
SDC1P18827 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDC1P18827 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.06□□□□□ -0.16
SDC1P18827 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDC1P18827 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
SDC1P18827 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDC1P18827 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.06□□□□□ -0.16
SDC1P18827 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.06□□□□□ -0.16
SDC1P18827 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.06□□□□□ -0.16
SDC1P18827 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
SDC1P18827 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.06□□□□□ -0.16
SDC1P18827 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDC1P18827 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDC1P18827 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.06□□□□□ -0.16
SDC1P18827 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.06□□□□□ -0.16
SDC1P18827 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.06□□□□□ -0.16
SDC1P18827 SORD2P-201ENST00000558556 1069 ntBASIC14.06□□□□□ -0.16
SDC1P18827 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SDC1P18827 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.06□□□□□ -0.16
SDC1P18827 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.06□□□□□ -0.16
SDC1P18827 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.06□□□□□ -0.16
SDC1P18827 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC14.06□□□□□ -0.16
SDC1P18827 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDC1P18827 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDC1P18827 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
SDC1P18827 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.06□□□□□ -0.16
SDC1P18827 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDC1P18827 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SDC1P18827 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.06□□□□□ -0.16
SDC1P18827 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC14.06□□□□□ -0.16
SDC1P18827 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.06□□□□□ -0.16
SDC1P18827 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDC1P18827 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDC1P18827 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDC1P18827 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SDC1P18827 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SDC1P18827 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
SDC1P18827 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
SDC1P18827 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
SDC1P18827 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.05□□□□□ -0.16
SDC1P18827 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
SDC1P18827 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.05□□□□□ -0.16
SDC1P18827 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.05□□□□□ -0.16
SDC1P18827 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.05□□□□□ -0.16
SDC1P18827 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
SDC1P18827 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
SDC1P18827 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.05□□□□□ -0.16
SDC1P18827 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.05□□□□□ -0.16
SDC1P18827 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SDC1P18827 PUDPP3-201ENST00000445368 636 ntBASIC14.05□□□□□ -0.16
SDC1P18827 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms