Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC11.49□□□□□ -0.57
CXCL1P09341 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC11.49□□□□□ -0.57
CXCL1P09341 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC11.49□□□□□ -0.57
CXCL1P09341 RNA5SP415-201ENST00000517246 115 ntBASIC11.49□□□□□ -0.57
CXCL1P09341 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC11.49□□□□□ -0.57
CXCL1P09341 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC11.49□□□□□ -0.57
CXCL1P09341 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC11.49□□□□□ -0.57
CXCL1P09341 AC148477.8-201ENST00000624298 468 ntBASIC11.49□□□□□ -0.57
CXCL1P09341 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
CXCL1P09341 PFKM-201ENST00000312352 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CXCL1P09341 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC11.49□□□□□ -0.57
CXCL1P09341 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CXCL1P09341 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
CXCL1P09341 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CXCL1P09341 POU2F2-216ENST00000560558 3282 ntTSL 5 BASIC11.49□□□□□ -0.57
CXCL1P09341 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CXCL1P09341 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
CXCL1P09341 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
CXCL1P09341 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC11.49□□□□□ -0.57
CXCL1P09341 MICAL1-208ENST00000630715 3678 ntTSL 2 BASIC11.49□□□□□ -0.57
CXCL1P09341 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
CXCL1P09341 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
CXCL1P09341 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC11.49□□□□□ -0.57
CXCL1P09341 TBC1D13-202ENST00000372648 3906 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CXCL1P09341 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CXCL1P09341 LOXL3-204ENST00000409549 2897 ntTSL 2 BASIC11.49□□□□□ -0.57
CXCL1P09341 FGFR1-207ENST00000397103 2953 ntTSL 5 BASIC11.49□□□□□ -0.57
CXCL1P09341 AC145098.2-201ENST00000623593 3026 ntBASIC11.49□□□□□ -0.57
CXCL1P09341 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CXCL1P09341 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 FAM102A-202ENST00000373084 3352 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 AL390066.1-201ENST00000456414 2302 ntTSL 2 BASIC11.48□□□□□ -0.57
CXCL1P09341 PIK3R1-213ENST00000521657 3891 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
CXCL1P09341 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 SLC8A3-205ENST00000394330 2622 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 STAT3-203ENST00000404395 2633 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 SH2D7-201ENST00000328828 2750 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
CXCL1P09341 FRMD1-205ENST00000440994 2857 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
CXCL1P09341 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC11.48□□□□□ -0.57
CXCL1P09341 BDH1-201ENST00000358186 3330 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
CXCL1P09341 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
CXCL1P09341 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC11.48□□□□□ -0.57
CXCL1P09341 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
CXCL1P09341 CSF3-203ENST00000394148 622 ntTSL 3 BASIC11.48□□□□□ -0.57
CXCL1P09341 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC11.48□□□□□ -0.57
CXCL1P09341 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC11.48□□□□□ -0.57
CXCL1P09341 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC11.48□□□□□ -0.57
CXCL1P09341 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC11.48□□□□□ -0.57
CXCL1P09341 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC11.48□□□□□ -0.57
CXCL1P09341 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC11.48□□□□□ -0.57
CXCL1P09341 IGHV3-22-201ENST00000520721 359 ntBASIC11.48□□□□□ -0.57
CXCL1P09341 CD63-204ENST00000546939 779 ntTSL 3 BASIC11.48□□□□□ -0.57
CXCL1P09341 SUOX-214ENST00000551841 906 ntTSL 3 BASIC11.48□□□□□ -0.57
CXCL1P09341 AL138918.1-201ENST00000568306 659 ntBASIC11.48□□□□□ -0.57
CXCL1P09341 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC11.48□□□□□ -0.57
CXCL1P09341 AP002472.1-201ENST00000577490 586 ntBASIC11.48□□□□□ -0.57
CXCL1P09341 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC11.48□□□□□ -0.57
CXCL1P09341 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC11.48□□□□□ -0.57
CXCL1P09341 AC027307.2-201ENST00000591252 911 ntBASIC11.48□□□□□ -0.57
CXCL1P09341 AC099522.2-201ENST00000607001 744 ntBASIC11.48□□□□□ -0.57
CXCL1P09341 ARFIP2-210ENST00000614314 3846 ntTSL 2 BASIC11.48□□□□□ -0.57
CXCL1P09341 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
CXCL1P09341 AL645728.2-202ENST00000641679 227 ntBASIC11.48□□□□□ -0.57
CXCL1P09341 GLIS3-202ENST00000381971 3961 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
CXCL1P09341 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
CXCL1P09341 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
CXCL1P09341 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC11.48□□□□□ -0.57
CXCL1P09341 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
CXCL1P09341 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 KLF7-204ENST00000423015 1788 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 TRIM40-207ENST00000396581 2086 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
CXCL1P09341 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 ZBTB20-211ENST00000471418 3133 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CXCL1P09341 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
CXCL1P09341 AC015712.2-201ENST00000560351 3688 ntTSL 2 BASIC11.48□□□□□ -0.57
CXCL1P09341 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
CXCL1P09341 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC11.47□□□□□ -0.57
CXCL1P09341 SLC28A1-203ENST00000394573 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
CXCL1P09341 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
CXCL1P09341 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
CXCL1P09341 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms